Target APC101565

Local target id
gi|16419997:01:108-175  
Stage
in_pdb   PDB:
Locus Tag/Selection DB Lookup
STM1478  
NCBI Protein Lookup
gi: 16419997   accession:  
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2  
Common Name
putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  
Gene Name
ydgH  
NCBI Annotation
similar to E. coli orf, hypothetical protein (AAC74676.1); Blastp hit to AAC74676.1 (314 aa), 90% identity in aa 1 - 314  
Selection Phase
CONS::PCSEP::Effectors  
Date Approved
Oct 05, 2010  
Justification for Selection
Salmonella secreted proteins identified via MS/MS  
Priority
9  
Sequence Length
314  
(Subtargets)
 
Molecular Weight
33.9 kDa  
Sequence
MKLKNTLLAS ALLSAAAFSV HAATELTPEQ AAALKPYDRI VITGRFNAIG DAVSAVSRRA DKEGAASFYV VDTSEFGNSG NWRVVADVYK ADAPKADAPK NRVINGIVEL PKDQAVQLEP YDTVTVQGFY RSQPEVNDAI TKAAKQKGAY AFYIVRQIDA NQGGNQRITA FIYKQDAKKR IVQSPDAIPA DSEAGRAALA QGGEAAKKVE IPGVATSASP SAEVGRFFET QSSKGGRYTV TLPDGTKVEE LNKATAAMMV PFDSVKFTGN YGNMTEISYQ VAKRAAKKGA KYYHITRQWQ ERGNNITISA DLYK  
DNA Sequence
ATGAAG CTTAAG AACACT CTCCTG GCGTCG GCTCTG CTTTCT GCGGCT GCTTTT TCTGTC CATGCA GCAACA GAACTG ACGCCG GAGCAA GCGGCT GCACTA AAACCT TATGAC CGCATC GTTATT ACCGGT CGTTTT AATGCT ATTGGC GATGCG GTCTCC GCCGTG TCCCGC CGCGCA GATAAA GAAGGC GCAGCC TCCTTC TATGTT GTCGAC ACCTCG GAGTTC GGCAAC AGTGGT AACTGG CGTGTT GTGGCG GACGTG TATAAA GCCGAC GCGCCG AAAGCC GACGCG CCCAAA AATCGT GTCATT AATGGC ATCGTG GAATTA CCGAAA GACCAG GCCGTA CAATTA GAACCG TATGAC ACCGTC ACCGTT CAGGGC TTCTAC CGTAGC CAGCCG GAAGTT AACGAT GCCATT ACGAAA GCGGCG AAACAA AAAGGC GCATAC GCTTTC TATATT GTTCGT CAGATA GATGCG AATCAG GGCGGA AACCAG CGCATC ACTGCA TTTATC TATAAA CAAGAT GCGAAA AAACGC ATCGTC CAGAGC CCGGAC GCTATT CCGGCA GACTCT GAAGCT GGCCGC GCCGCG CTGGCT CAGGGC GGCGAA GCTGCG AAGAAA GTCGAA ATTCCA GGCGTC GCCACG TCAGCC TCGCCG AGCGCC GAAGTA GGCCGT TTCTTC GAAACG CAATCC TCCAAA GGCGGA CGTTAC ACTGTC ACACTT CCGGAT GGCACA AAAGTT GAGGAG CTGAAT AAAGCG ACGGCT GCGATG ATGGTG CCTTTC GACAGC GTTAAG TTCACC GGCAAC TACGGC AATATG ACAGAA ATCTCC TATCAG GTCGCC AAACGC GCGGCG AAGAAA GGCGCT AAGTAT TATCAT ATTACG CGTCAG TGGCAG GAGCGC GGTAAT AACATC ACCATC AGCGCC GACCTC TATAAA  
Community nominated
False  
Partnership nominated
PCSEP  
Biomedical
True  
Metagenomic
False  
Structural coverage
False  
Psi 2
False