Target APC108257

Local target id
OTH0041  
Stage
in_pdb   PDB:
NCBI Protein Lookup
gi: 71725172   accession:  
Organism
Pseudomonas syringae pv. phaseolicola 1448A  
Common Name
type III effector HopAB1 [Pseudomonas syringae pv. phaseolicola 1448A]  
NCBI Gene Lookup
3555294  
Selection Phase
MCSG::Biology::Pathogens  
Date Approved
Oct 12, 2011  
Justification for Selection
PSI2 advanced targets  
Priority
1  
Sequence Length
539  
(Subtargets)
 
Molecular Weight
59.6 kDa  
Sequence
MPGINGAGPS NFFWQWRTDG EPVTEREHDS SRSASSANSP ELPPPASPAE SGRQRLLRSS ALSRQTREWL EATPARVQGA TPPAEARQSP EAQQAERIVQ ELVRGGADLN NVRTMLRNVM DNNAVAFSRV ERDILLQHFP NMPMTGISSD SVLANELRQR LRQTVRQQRI QSSTPARLAD SSSGSSQRSL IGRSTMLMTP GRSSSSSAAA SRTSVDRHPQ GLDLESARLA SAARHNHSAN QTNEALRRLT QEGVDMERLR TSLGRYIMSL EPLPPDLRRA LESVGINPFI PEELSLVDHP VLNFSAALNR MLASRQTTTN SPELPPLASS AESGRRRLLR SPPLLSGQRE WIEQSMRQEA EPQSSRLNRA VRLAVMPPQN ENEDNVAYAI RLRRLNPGAD VSRVVASFIT DPAARQQVVN DIRAALDIAP QFSQLRTISK ADAESEELGF RDAADHPDNA TSCLFGEELS LSNPDQQVIG LAVNPTDKPQ PYSQEVNKAL TFMDMKKLAQ YLADKPEHPL NRQRLDAKNI AKYAFKIVP  
DNA Sequence
ATGCCG GGTATC AACGGA GCAGGA CCATCA AATTTT TTTTGG CAGTGG CGCACA GACGGC GAGCCA GTAACT GAGCGC GAACAT GACTCC AGTCGC AGTGCC AGCTCG GCGAAC AGTCCG GAGTTG CCGCCG CCCGCA TCTCCT GCGGAA TCCGGA CGCCAG AGGTTG CTACGA TCCAGC GCGTTG TCGCGG CAAACC AGAGAA TGGCTG GAGGCA ACGCCT GCCCGT GTCCAA GGCGCC ACTCCG CCCGCA GAAGCC AGGCAG TCGCCT GAGGCA CAACAG GCAGAG CGCATC GTTCAG GAGTTG GTCAGG GGAGGC GCTGAT CTTAAT AATGTT CGCACC ATGCTC AGAAAT GTAATG GATAAC AACGCC GTAGCT TTTTCT CGAGTC GAACGG GATATC TTGCTT CAACAT TTTCCT AACATG CCTATG ACTGGA ATCAGC AGCGAC TCGGTG CTCGCT AACGAG CTCCGA CAGAGG CTTCGT CAAACG GTCCGC CAACAA AGAATA CAATCG TCAACG CCTGCC CGCCTC GCAGAC TCATCA TCAGGA AGCAGC CAGCGT TCGTTA ATTGGG CGGTCC ACTATG TTGATG ACACCG GGCCGA AGCTCG TCTTCG AGCGCG GCGGCT TCTAGA ACATCG GTCGAC AGGCAT CCTCAA GGCCTG GACCTG GAATCA GCACGC CTCGCC AGTGCT GCGAGG CATAAT CATAGT GCCAAC CAGACT AACGAA GCACTG CGCAGA TTGACT CAAGAG GGAGTG GACATG GAGCGC CTGCGC ACCTCT CTTGGT CGCTAT ATAATG TCGCTT GAACCG CTACCC CCAGAT TTGAGG CGCGCG TTAGAA AGTGTA GGCATT AATCCC TTTATA CCAGAG GAGTTG AGCTTG GTGGAT CACCCC GTGTTG AACTTC AGTGCT GCGCTG AACCGC ATGCTC GCTTCG CGTCAG ACCACT ACGAAC AGTCCG GAATTG CCGCCG CTCGCA TCTTCT GCGGAA TCCGGA CGCCGG AGGCTG CTACGT TCCCCA CCGTTG TTGTCT GGCCAA AGAGAA TGGATT GAGCAG AGCATG CGGCAA GAAGCA GAGCCT CAATCC TCACGC CTCAAT AGGGCT GTAAGA TTGGCG GTGATG CCACCG CAGAAT GAAAAT GAAGAT AATGTG GCTTAC GCAATA CGCTTG CGTAGA CTGAAC CCGGGG GCGGAT GTAAGT AGGGTA GTTGCA TCCTTT ATAACT GACCCG GCGGCT CGACAG CAAGTT GTGAAT GATATC CGCGCA GCCTTG GATATA GCTCCA CAATTT AGTCAA TTGCGT ACAATC TCGAAG GCAGAT GCTGAA TCTGAA GAGTTG GGTTTC AGAGAT GCGGCA GATCAC CCCGAC AACGCG ACGTCC TGCCTT TTTGGT GAAGAA TTGTCA CTGAGT AATCCG GATCAG CAGGTA ATCGGT CTAGCG GTTAAT CCGACG GATAAG CCGCAG CCTTAC AGCCAA GAGGTA AACAAG GCTCTT ACATTC ATGGAT ATGAAA AAACTT GCCCAA TACCTG GCAGAC AAGCCC GAGCAT CCGCTG AACAGA CAAAGG CTTGAT GCCAAA AATATC GCTAAG TACGCT TTTAAA ATTGTT CCA  
Community nominated
False  
Partnership nominated
 
Biomedical
True  
Metagenomic
False  
Structural coverage
False  
Psi 2
False