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Structure of 000017

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GapN from Methanocaldococcus jannaschii DSM 2661

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NYSGRC target
000017 
PDB Id
3PQA (NCBI MMDB) 
Authors
V.N.Malashkevich,R.Toro,R.Seidel,S.Garrett,R.Foti,S.C.Almo,New York Structural Genomics Research Consortium (Nysgrc) 
Responsible person
Vladimir Malashkevich 
Responsible lab
Albert Einstein College of Medicine 
Deposition Date
Nov 25, 2010 
Release Date
Dec 15, 2020 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    SO4 sulfate ion crystallization

    Structure information

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    Unit cell parameters

    Space Group
    C 1 2 1  
    Unit Cell

    a=164.57Å, b=77.57Å, c=164.28Å
    α=90.00, β=116.29, γ=90.00  
    Solvent content
    43.35  
    Matthews coefficient
    2.17  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    19.96-1.50Å (1.54-1.50Å)  
    Rall(%)
    18.9  
    Rwork(%)
    18.7 (41.1)  
    Rfree(%)
    22.2 (40.7)  
    Num. observed reflections
    259063 (8391)  
    Num. Rfree reflections
    13212 (413)  
    Completeness(%)
    83.3 (38.6)  

    Model parameters

    Num Atoms
    14354  
    Num Waters
    1355  
    Num Hetatoms
    1390  
    Model mean isotropic B factor
    18.380Å2  
    RMSD bond length
    0.010Å  
    RMSD bond angle
    1.227°  
    Filename uploaded
    rcsb062688.pdb (uploaded on Feb 15, 2011 3:36 PM)  
    Inserted
    Feb 07, 2011