Structure of 000017

CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPN FROM METHANOCALDOCOCCUS JANNASCHII DSM 2661 COMPLEXED WITH NADP

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NYSGRC target
000017 
PDB Id
3RHD (NCBI MMDB) 
Authors
V.N.Malashkevich,R.Toro,R.Seidel,S.Garrett,R.Foti,S.C.Almo,New York Structural Genomics Research Consortium (Nysgrc) 
Responsible person
Vladimir Malashkevich 
Responsible lab
Albert Einstein College of Medicine 
Deposition Date
Apr 11, 2011 
Release Date
 

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    NAP NADP nicotinamide-adenine-dinucleotide phosphate biological

    Structure information

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    Unit cell parameters

    Space Group
    C 1 2 1  
    Unit Cell

    a=164.24Å, b=77.38Å, c=167.39Å
    α=90.00, β=118.29, γ=90.00  
    Solvent content
    43.14  
    Matthews coefficient
    2.16  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    19.96-2.20Å (2.26-2.20Å)  
    Rall(%)
    18.2  
    Rwork(%)
    17.9 (26.1)  
    Rfree(%)
    23.8 (30.2)  
    Num. observed reflections
    98274 (6652)  
    Num. Rfree reflections
    4913 (310)  
    Completeness(%)
    99.6 (97.1)  

    Model parameters

    Num Atoms
    14285  
    Num Waters
    610  
    Num Hetatoms
    734  
    Model mean isotropic B factor
    27.950Å2  
    RMSD bond length
    0.010Å  
    RMSD bond angle
    1.264°  
    Filename uploaded
    rcsb064933.pdb (uploaded on Oct 10, 2011 12:53 PM)  
    Inserted
    Oct 10, 2011