Structure of 000084

Crystal structure of an uncharacterized protein from Methanosarcina mazei

(tree view)
Edit deposit information
NYSGRC target
000084 
PDB Id
3R6A (NCBI MMDB) 
Authors
S.Eswaramoorthy,S.C.Almo,S.Swaminathan,New York Structural Genomics Research Consortium (Nysgrc) 
Responsible person
Subramanyam Swaminathan 
Responsible lab
Brookhaven National Laboratory 
Deposition Date
Mar 21, 2011 
Release Date
 

Annotation

Add an annotation
Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
    • Presentation Controlls:
    rotate
    with the [Left]-mouse
    drag
    with the [Middle]-mouse (or with [Ctrl]-key pressed)
    zoom
    with the [Left]-mouse in the left zone of the window: zoom-up, unzoom-down
    clipping
    with the [Left]-mouse in the right zone of the window

    Presentation Options:
    background:
    black, white
    ribbon style:
    normal, smooth
    ribbon color:
    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    ACT acetate ion
    MSE selenomethionine modified residue

    Structure information

    View structure information | Edit structure information (upload a PDB file)

    Unit cell parameters

    Space Group
    P 61  
    Unit Cell

    a=62.43Å, b=62.43Å, c=149.59Å
    α=90.00, β=90.00, γ=120.00  
    Solvent content
    51  
    Matthews coefficient
    2.51  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    43.82-1.76Å (1.87-1.76Å)  
    Rall(%)
    21.8  
    Rwork(%)
    21.8 (23.4)  
    Rfree(%)
    23.4 (25.8)  
    Num. observed reflections
    31882 (4721)  
    Num. Rfree reflections
    1530 (243)  
    Completeness(%)
    97.7 (91.6)  

    Model parameters

    Num Atoms
    1862  
    Num Waters
    101  
    Num Hetatoms
    153  
    Model mean isotropic B factor
    24.500Å2  
    RMSD bond length
    0.005Å  
    RMSD bond angle
    1.400°  
    RMSD dihedral angle
    25°
     
    RMSD improper torsion angle
    0.7°
     
    Filename uploaded
    3R6A.pdb (uploaded on Nov 01, 2011 4:58 PM)  
    Inserted
    Nov 01, 2011