Publications

Locations of collaborators (co-authors of NYSGRC and NYSGXRC papers)

    2015
  1. Zheng H, Shabalin IG, Handing KB, Bujnicki JM, Minor W (2015)
    Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection.
    Nucleic Acids Research,43:3789-801 (Details) (Abstract)
    Times cited: 6
  2. 2014
  3. Yap EH, Rosche T, Almo S, Fiser A (2014)
    Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles.
    Journal of Molecular Biology,426:945-61 (Details) (Abstract)
    Times cited: 5
  4. Padlan CS, Malashkevich VN, Almo SC, Levy M, Brenowitz M, Girvin ME (2014)
    An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates.
    RNA (New York, N.Y.),20:447-61 (Details) (Abstract)
    Times cited: 8
  5. Singh H, Arentson BW, Becker DF, Tanner JJ (2014)
    Structures of the PutA peripheral membrane flavoenzyme reveal a dynamic substrate-channeling tunnel and the quinone-binding site.
    Proceedings of the National Academy of Sciences of the United States of America,111:3389-94 (Details) (Abstract)
    Times cited: 17
  6. Khafizov K, Madrid-Aliste C, Almo SC, Fiser A (2014)
    Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.
    Proceedings of the National Academy of Sciences of the United States of America,111:3733-8 (Details) (Abstract)
    Times cited: 26
  7. Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR (2014)
    Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species.
    Journal of Molecular Biology,426:1452-68 (Details) (Abstract)
    Times cited: 8
  8. Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A (2014)
    ModBase, a database of annotated comparative protein structure models and associated resources.
    Nucleic Acids Research,42:D336-46 (Details) (Abstract)
    Times cited: 37
  9. Almo SC, Love JD (2014)
    Better and faster: improvements and optimization for mammalian recombinant protein production.
    Current Opinion in Structural Biology,26C:39-43 (Details) (Abstract)
    Times cited: 17
  10. Zimmerman MD, Grabowski M, Domagalski MJ, Maclean EM, Chruszcz M, Minor W (2014)
    Data management in the modern structural biology and biomedical research environment.
    Methods in Molecular Biology,1140:1-25 (Details) (Abstract)
    Times cited: 7
  11. Zheng H, Hou J, Zimmerman MD, Wlodawer A, Minor W (2014)
    The future of crystallography in drug discovery.
    Expert Opin Drug Discov,9:125-37 (Details) (Abstract)
    Times cited: 9
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Page 1 of 24, showing 10 records out of 234 total, starting on record 1, ending on 10

Pmid Authors Title Journal Issn Year Vol Pages Center Target Pdb Type Times Cited
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(psipubs) 23 queries took 53 ms
NrQueryErrorAffectedNum. rowsTook (ms)
1SELECT COUNT(*) AS "count" FROM "publication" AS "Publication" LEFT JOIN "journal_alias" AS "JournalAlias" ON ("Publication"."journal_short" = "JournalAlias"."name") WHERE center like'%NYSGRC%' or center like '%NYSGXRC%' 115
2SELECT "Publication"."id" AS "Publication__id", "Publication"."pmid" AS "Publication__pmid", "Publication"."authors" AS "Publication__authors", "Publication"."title" AS "Publication__title", "Publication"."journal_short" AS "Publication__journal_short", "Publication"."issn" AS "Publication__issn", "Publication"."year" AS "Publication__year", "Publication"."vol" AS "Publication__vol", "Publication"."pages" AS "Publication__pages", "Publication"."center" AS "Publication__center", "Publication"."target_id" AS "Publication__target_id", "Publication"."pdb_id" AS "Publication__pdb_id", "Publication"."type" AS "Publication__type", "Publication"."status" AS "Publication__status", "Publication"."source" AS "Publication__source", "Publication"."remark" AS "Publication__remark", "Publication"."verified" AS "Publication__verified", "Publication"."frozen" AS "Publication__frozen", "Publication"."times_cited" AS "Publication__times_cited", "Publication"."times_cited_update" AS "Publication__times_cited_update", "Publication"."inserted" AS "Publication__inserted", "Publication"."updated" AS "Publication__updated", "Publication"."times_cited_status" AS "Publication__times_cited_status", "Publication"."pubmed_times_cited" AS "Publication__pubmed_times_cited", "Publication"."pubmed_times_cited_update" AS "Publication__pubmed_times_cited_update", "Publication"."pubmed_times_cited_status" AS "Publication__pubmed_times_cited_status", "Publication"."cover_image" AS "Publication__cover_image", "Publication"."initiative_id" AS "Publication__initiative_id", "Publication"."pmcid" AS "Publication__pmcid", "Publication"."doi" AS "Publication__doi", "Publication"."date_pubmed_created" AS "Publication__date_pubmed_created", "Publication"."date_pubmed_updated" AS "Publication__date_pubmed_updated", "Publication"."pub_month" AS "Publication__pub_month", "Publication"."pub_day" AS "Publication__pub_day", "Publication"."date_accepted" AS "Publication__date_accepted", "Publication"."date_pubmed_history" AS "Publication__date_pubmed_history", "Publication"."date_aheadofprint" AS "Publication__date_aheadofprint", "Publication"."cite_error_id" AS "Publication__cite_error_id", "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "publication" AS "Publication" LEFT JOIN "journal_alias" AS "JournalAlias" ON ("Publication"."journal_short" = "JournalAlias"."name") WHERE center like'%NYSGRC%' or center like '%NYSGXRC%' ORDER BY "year" desc, "id" desc LIMIT 1010106
3SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Nucleic acids research' 111
4SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '165' 113
5SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Journal of molecular biology' 116
6SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '125' 112
7SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'RNA (New York, N.Y.)' 114
8SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '1899' 113
9SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Proceedings of the National Academy of Sciences of the United States of America' 111
10SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '6' 111
11SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Proceedings of the National Academy of Sciences of the United States of America' 111
12SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '6' 114
13SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Journal of molecular biology' 111
14SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '125' 111
15SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Nucleic acids research' 111
16SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '165' 111
17SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Current opinion in structural biology' 111
18SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '88' 114
19SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Methods in molecular biology (Clifton, N.J.)' 113
20SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '144' 111
21SELECT "JournalAlias"."name" AS "JournalAlias__name", "JournalAlias"."journal_id" AS "JournalAlias__journal_id" FROM "journal_alias" AS "JournalAlias" WHERE "JournalAlias"."name" = 'Expert Opin Drug Discov' 111
22SELECT "Journal"."id" AS "Journal__id", "Journal"."display_name" AS "Journal__display_name", "Journal"."issn" AS "Journal__issn", "Journal"."impact_factor" AS "Journal__impact_factor", "Journal"."impact_factor_year" AS "Journal__impact_factor_year", "Journal"."journal_type" AS "Journal__journal_type" FROM "journal" AS "Journal" WHERE "Journal"."id" = '296' 111
23SELECT "PublicationPdb"."id" AS "PublicationPdb__id", "PublicationPdb"."publication_id" AS "PublicationPdb__publication_id", "PublicationPdb"."pdb_id" AS "PublicationPdb__pdb_id" FROM "publication_pdb" AS "PublicationPdb" WHERE "PublicationPdb"."publication_id" IN ('2827', '2730', '2720', '2716', '2715', '2713', '2697', '2664', '2598', '2576') 11111
(default) 2 queries took 29 ms
NrQueryErrorAffectedNum. rowsTook (ms)
1SELECT "User"."id" AS "User__id", "User"."username" AS "User__username", "User"."password" AS "User__password", "User"."email" AS "User__email", "User"."staff_id" AS "User__staff_id", "User"."last_login" AS "User__last_login", "User"."last_operation" AS "User__last_operation", "User"."request_person_id" AS "User__request_person_id", "User"."access_group_id" AS "User__access_group_id", "Staff"."id" AS "Staff__id", "Staff"."first_name" AS "Staff__first_name", "Staff"."last_name" AS "Staff__last_name", "Staff"."email" AS "Staff__email", "Staff"."phone" AS "Staff__phone", "Staff"."lab_id" AS "Staff__lab_id", "Staff"."responsibility" AS "Staff__responsibility", "Staff"."databases" AS "Staff__databases", "Staff"."admin" AS "Staff__admin", "Staff"."protein_production" AS "Staff__protein_production", "Staff"."crystallography" AS "Staff__crystallography", "Staff"."pi" AS "Staff__pi", "Staff"."lab_contact" AS "Staff__lab_contact", "Staff"."inserted" AS "Staff__inserted", "Staff"."updated" AS "Staff__updated", "Staff"."institution_id" AS "Staff__institution_id", "Staff"."middle_initials" AS "Staff__middle_initials", "Staff"."active" AS "Staff__active", "Staff"."manager" AS "Staff__manager", "Staff"."function" AS "Staff__function", "Staff"."real_id" AS "Staff__real_id" FROM "user_view" AS "User" LEFT JOIN "staff" AS "Staff" ON ("User"."staff_id" = "Staff"."id") WHERE "User"."username" = 'Nobody' LIMIT 10014
2SELECT "User"."id" AS "User__id", "User"."username" AS "User__username", "User"."password" AS "User__password", "User"."email" AS "User__email", "User"."staff_id" AS "User__staff_id", "User"."last_login" AS "User__last_login", "User"."last_operation" AS "User__last_operation", "User"."request_person_id" AS "User__request_person_id", "User"."access_group_id" AS "User__access_group_id", "Staff"."id" AS "Staff__id", "Staff"."first_name" AS "Staff__first_name", "Staff"."last_name" AS "Staff__last_name", "Staff"."email" AS "Staff__email", "Staff"."phone" AS "Staff__phone", "Staff"."lab_id" AS "Staff__lab_id", "Staff"."responsibility" AS "Staff__responsibility", "Staff"."databases" AS "Staff__databases", "Staff"."admin" AS "Staff__admin", "Staff"."protein_production" AS "Staff__protein_production", "Staff"."crystallography" AS "Staff__crystallography", "Staff"."pi" AS "Staff__pi", "Staff"."lab_contact" AS "Staff__lab_contact", "Staff"."inserted" AS "Staff__inserted", "Staff"."updated" AS "Staff__updated", "Staff"."institution_id" AS "Staff__institution_id", "Staff"."middle_initials" AS "Staff__middle_initials", "Staff"."active" AS "Staff__active", "Staff"."manager" AS "Staff__manager", "Staff"."function" AS "Staff__function", "Staff"."real_id" AS "Staff__real_id" FROM "user_view" AS "User" LEFT JOIN "staff" AS "Staff" ON ("User"."staff_id" = "Staff"."id") WHERE "User"."username" = 'Nobody' LIMIT 10015
(labdb) 0 query took ms
NrQueryErrorAffectedNum. rowsTook (ms)