New York Center for Structural Genomics

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NYSGRC ID	Priority	stage	Locus Tag	NCBI GI	Common Name	Sequence Length	Project	Homolog PDB ID	Homolog Sequence Identity	Target Organism	Request Person
019265 (show subtarget assignments)	1	selected		3751	histone H2A1	132	NUP:CGO (CarGO)	1ID3	99.2%	Saccharomyces cerevisiae

019306 (show subtarget assignments)	1	selected		29653	putative oncogene [Homo sapiens]	2090	NUP:NPC (NucleoPorin Complex)	3FMO	21.4%	Homo sapiens

019258 (show subtarget assignments)	1	selected		31680	alpha-glucocorticoid receptor	777	NUP:CGO (CarGO)	1NHZ	35.4%	Homo sapiens

019270 (show subtarget assignments)	1	selected		32548	huprobox	270	NUP:CGO (CarGO)	2E1O	21.1%	Homo sapiens

019274 (show subtarget assignments)	1	selected		36113	unnamed protein product	144	NUP:CGO (CarGO)	1JID	83.3%	Homo sapiens

019275 (show subtarget assignments)	1	selected		36605	SRY	204	NUP:CGO (CarGO)	1J46	41.2%	Homo sapiens

019671 (show subtarget assignments)	1	selected		52998	macrophage mannose receptor precursor [M...	1456	IFN:LEC	1DQG	9.3%	Mus musculus

019672 (show subtarget assignments)	1	selected		54782	thrombomodulin [Mus musculus]	577	IFN:LEC	1DX5	13.4%	Mus musculus

005760 (show subtarget assignments)	1	in_crystallization_trials		114764	RecName: Full=B-cell antigen receptor co...	228	IFN:IgSF (Immune Function Network)	3KHO	58.3%	Mus musculus

005781 (show subtarget assignments)	1	in_crystallization_trials		114871	RecName: Full=CD48 antigen; AltName: Ful...	243	IFN:IgSF (Immune Function Network)	2EDO	47.3%	Homo sapiens

005795 (show subtarget assignments)	1	soluble		114872	RecName: Full=CD48 antigen; AltName: Ful...	240	IFN:IgSF (Immune Function Network)	2PTT	41.7%	Mus musculus

005791 (show subtarget assignments)	1	cloned		116038	RecName: Full=T-cell surface glycoprotei...	213	IFN:IgSF (Immune Function Network)	3DMM	70.4%	Mus musculus

005936 (show subtarget assignments)	1	selected		116918	RecName: Full=Contactin-1; AltName: Full...	1020	IFN:IgSF (Immune Function Network)	2OM5	20.5%	Mus musculus

005905 (show subtarget assignments)	1	in_crystallization_trials		119873	RecName: Full=High affinity immunoglobul...	404	IFN:IgSF (Immune Function Network)	3RJD	47.8%	Mus musculus

005906 (show subtarget assignments)	1	in_crystallization_trials		120046	RecName: Full=Basic fibroblast growth fa...	822	IFN:IgSF (Immune Function Network)	3GQL	38.5%	Homo sapiens

005943 (show subtarget assignments)	1	cloned		120049	RecName: Full=Fibroblast growth factor r...	821	IFN:IgSF (Immune Function Network)	2PSQ	43.4%	Homo sapiens

005908 (show subtarget assignments)	1	in_crystallization_trials		120050	RecName: Full=Fibroblast growth factor r...	806	IFN:IgSF (Immune Function Network)	1RY7	41.3%	Homo sapiens

005772 (show subtarget assignments)	1	soluble		122256	RecName: Full=HLA class II histocompatib...	266	IFN:IgSF (Immune Function Network)	1AQD	66.9%	Homo sapiens

005947 (show subtarget assignments)	1	selected		124311	RecName: Full=Interleukin-1 receptor typ...	410	IFN:IgSF (Immune Function Network)	3O4O	48.3%	Mus musculus

006097 (show subtarget assignments)	1	selected		125472	RecName: Full=Mast/stem cell growth fact...	976	IFN:IgSF (Immune Function Network)	2EC8	53.2%	Homo sapiens

006205 (show subtarget assignments)	1	selected		129892	RecName: Full=Alpha-type platelet-derive...	1089	IFN:IgSF (Immune Function Network)	1PKG	18.8%	Homo sapiens

006077 (show subtarget assignments)	1	selected		136237	RecName: Full=BDNF/NT-3 growth factors r...	821	IFN:IgSF (Immune Function Network)	3V5Q	29.1%	Mus musculus

019264 (show subtarget assignments)	1	selected		171698	endonuclease (put.); putative	586	NUP:CGO (CarGO)	1JVA	26.9%	Saccharomyces cerevisiae

019323 (show subtarget assignments)	1	selected		171959	myosin-like protein	1875	NUP:NPC (NucleoPorin Complex)	1I84	9.4%	Saccharomyces cerevisiae

019266 (show subtarget assignments)	1	selected		172034	nucleosome assembly protein	417	NUP:CGO (CarGO)	2AYU	98.6%	Saccharomyces cerevisiae

019325 (show subtarget assignments)	1	selected		172056	nucleoporin (NUP1) (put.); putative	1076	NUP:NPC (NucleoPorin Complex)	2BPT	3.6%	Saccharomyces cerevisiae

019267 (show subtarget assignments)	1	selected		172092	polyadenylate-binding protein	577	NUP:CGO (CarGO)	1CVJ	19.1%	Saccharomyces cerevisiae

019257 (show subtarget assignments)	1	selected		172773	DNA strand transferase alpha	309	NUP:CGO (CarGO)	1PQV	97.7%	Saccharomyces cerevisiae

019276 (show subtarget assignments)	1	selected		172777	Sua7	345	NUP:CGO (CarGO)	3K7A	100%	Saccharomyces cerevisiae

019278 (show subtarget assignments)	1	selected		172893	transcription factor IIA	286	NUP:CGO (CarGO)	1RM1	100%	Saccharomyces cerevisiae

019279 (show subtarget assignments)	1	selected		172895	transcription factor IIA	122	NUP:CGO (CarGO)	1RM1	100%	Saccharomyces cerevisiae

020332 (show subtarget assignments)	1	purified		179531	IgE-binding protein [Homo sapiens]	250	IFN:LEC	1KJL	58.4%	Homo sapiens

011074 (show subtarget assignments)	1	selected		180085	T-cell activation antigen [Homo sapiens]...	260	IFN:TNFR	3ME2	15.8%	Homo sapiens

011075 (show subtarget assignments)	1	selected		180096	CD30 antigen [Homo sapiens]	595	IFN:TNFR	3K51	8.7%	Homo sapiens

011072 (show subtarget assignments)	1	selected		182410	Fas antigen [Homo sapiens]	335	IFN:TNFR	3THM	46.6%	Homo sapiens

019673 (show subtarget assignments)	1	selected		183391	granule membrane protein-140 (GMP-140) p...	830	IFN:LEC	2Q7Z	24.6%	Homo sapiens

019271 (show subtarget assignments)	1	selected		186800	ribosomal protein L12	165	NUP:CGO (CarGO)	2ZKR	100%	Homo sapiens

019674 (show subtarget assignments)	1	selected		191772	aggrecan [Mus musculus]	2132	IFN:LEC	3HQV	10.1%	Mus musculus

019675 (show subtarget assignments)	1	selected		200553	P-selectin [Mus musculus]	768	IFN:LEC	2GSX	24.5%	Mus musculus

019676 (show subtarget assignments)	1	selected		202438	YE1/48 [Mus musculus]	262	IFN:LEC	3G8L	56.5%	Mus musculus

012343 (show subtarget assignments)	1	soluble		207127	syntaxin A [Rattus norvegicus]	285	CAD:SYN	3C98	92.6%	Rattus norvegicus

011094 (show subtarget assignments)	1	selected		219666	glycoprotein 34 [Homo sapiens]	183	IFN:TNFL	2HEV	72.2%	Homo sapiens

019677 (show subtarget assignments)	1	selected		220481	asialoglycoprotein receptor [Mus musculu...	284	IFN:LEC	1DV8	35.9%	Mus musculus

005910 (show subtarget assignments)	1	cloned		232109	RecName: Full=FL cytokine receptor; AltN...	992	IFN:IgSF (Immune Function Network)	3QS9	43.7%	Mus musculus

019678 (show subtarget assignments)	1	selected		233018	mannose-binding protein C [Mus sp.]	244	IFN:LEC	1BV4	38.1%	Mus sp.

020414 (show subtarget assignments)	1	expressed		285953	KIAA0022 [Homo sapiens]	170	IFN:LEC	1WMY	13.5%	Homo sapiens

019679 (show subtarget assignments)	1	selected		286107	PAP homologous protein [Mus musculus]	175	IFN:LEC	1UV0	57.2%	Mus musculus

019277 (show subtarget assignments)	1	selected		292828	transition protein 2	138	NUP:CGO (CarGO)			Homo sapiens

019282 (show subtarget assignments)	1	selected		295764	NDC1	655	NUP:MEM (MEMbrane)			Saccharomyces cerevisiae

011096 (show subtarget assignments)	1	selected		307128	CD27 ligand [Homo sapiens]	193	IFN:TNFL			Homo sapiens

011067 (show subtarget assignments)	1	selected		339750	tumor necrosis factor receptor 1 [Homo s...	455	IFN:TNFR	1EXT	35.4%	Homo sapiens

011069 (show subtarget assignments)	1	selected		339762	tumor necrosis factor receptor 2 related...	435	IFN:TNFR	3ME2	14.7%	Homo sapiens

019281 (show subtarget assignments)	1	selected		340203	vitamin D receptor	427	NUP:CGO (CarGO)	1DB1	60.6%	Homo sapiens

011097 (show subtarget assignments)	1	selected		349278	CD30 ligand [Homo sapiens]	234	IFN:TNFL			Homo sapiens

019333 (show subtarget assignments)	1	selected		349750	Yar002wp	539	NUP:NPC (NucleoPorin Complex)			Saccharomyces cerevisiae

019287 (show subtarget assignments)	1	cloned		395232	NIC96 [Saccharomyces cerevisiae]	838	NUP:NPC (NucleoPorin Complex)	2QX5	78%	Saccharomyces cerevisiae

005761 (show subtarget assignments)	1	soluble		399116	RecName: Full=Carcinoembryonic antigen-r...	526	IFN:IgSF (Immune Function Network)	1E07	56.4%	Homo sapiens

019337 (show subtarget assignments)	1	selected		406225	nuclear pore complex protein hnup153	1475	NUP:NPC (NucleoPorin Complex)	3GJ7	5.5%	Homo sapiens

019311 (show subtarget assignments)	1	selected		432654	nucleoporin p62 [Homo sapiens]	522	NUP:NPC (NucleoPorin Complex)	3T97	11.7%	Homo sapiens

019397 (show subtarget assignments)	1	selected		433639	E541	541	NUP:NPC (NucleoPorin Complex)	3HXR	48.2%	Saccharomyces cerevisiae

019142 (show subtarget assignments)	1	selected		444043	glucocorticoid receptor protein	776	NUP:CGO (CarGO)	1NHZ	26.2%	Xenopus laevis

005763 (show subtarget assignments)	1	selected		461664	RecName: Full=B-cell receptor CD22; AltN...	862	IFN:IgSF (Immune Function Network)	1E07	17%	Mus musculus

011087 (show subtarget assignments)	1	selected		471245	BCMA peptide [Homo sapiens]	184	IFN:TNFR	2KN1	26.6%	Homo sapiens

019283 (show subtarget assignments)	1	cloned		473154	POM152	1337	NUP:MEM (MEMbrane)			Saccharomyces cerevisiae

019253 (show subtarget assignments)	1	selected		487932	Yhr088wp	295	NUP:CGO (CarGO)			Saccharomyces cerevisiae

019252 (show subtarget assignments)	1	selected		493220	La protein homologue; phenotype: not ess...	275	NUP:CGO (CarGO)	1YTY	16.4%	Saccharomyces cerevisiae

019328 (show subtarget assignments)	1	cloned		496702	B-1502 protein	1502	NUP:NPC (NucleoPorin Complex)	3I5P	34.9%	Saccharomyces cerevisiae

019680 (show subtarget assignments)	1	selected		500644	Ly49c [Mus musculus]	288	IFN:LEC	3C8J	30.6%	Mus musculus

019681 (show subtarget assignments)	1	selected		500646	Ly49c [Mus musculus]	266	IFN:LEC	3C8J	72.2%	Mus musculus

019326 (show subtarget assignments)	1	selected		505271	Nup145p	1317	NUP:NPC (NucleoPorin Complex)	3JRO	33.9%	Saccharomyces cerevisiae

019268 (show subtarget assignments)	1	selected		510469	protein phosphatase 2A 65 kDa regulatory...	589	NUP:CGO (CarGO)	2IAE	100%	Sus scrofa

019143 (show subtarget assignments)	1	selected		515835	histone 2b protein	126	NUP:CGO (CarGO)	2CV5	96%	Mus musculus

020442 (show subtarget assignments)	1	selected		536218	KAP104 [Saccharomyces cerevisiae]	918	NUP:KAR	1QBK	33.1%	Saccharomyces cerevisiae

006287 (show subtarget assignments)	1	selected		544322	RecName: Full=Vascular endothelial growt...	1363	IFN:IgSF (Immune Function Network)	3V2A	21%	Mus musculus

006199 (show subtarget assignments)	1	selected		548626	RecName: Full=Receptor-type tyrosine-pro...	1457	IFN:IgSF (Immune Function Network)	2V5Y	27%	Mus musculus

006288 (show subtarget assignments)	1	selected		549319	RecName: Full=Vascular endothelial growt...	1333	IFN:IgSF (Immune Function Network)	3HNG	24.8%	Mus musculus

019144 (show subtarget assignments)	1	selected		557223	ribosomal protein 10	256	NUP:CGO (CarGO)	3U5C	79.3%	Candida albicans

019324 (show subtarget assignments)	1	selected		557774	unnamed protein product	1679	NUP:NPC (NucleoPorin Complex)			Saccharomyces cerevisiae

011095 (show subtarget assignments)	1	selected		595431	Fas ligand [Homo sapiens]	281	IFN:TNFL	3GIG	18.2%	Homo sapiens

019682 (show subtarget assignments)	1	selected		602408	member of the Ly-49 gene family; previou...	266	IFN:LEC	3C8J	66.5%	Mus musculus

019327 (show subtarget assignments)	1	cloned		603343	Nup157p: nucleoporin	1391	NUP:NPC (NucleoPorin Complex)	3I5P	14.9%	Saccharomyces cerevisiae

019285 (show subtarget assignments)	1	selected		603345	Rae1p [Saccharomyces cerevisiae]	365	NUP:NPC (NucleoPorin Complex)	3MMY	41%	Saccharomyces cerevisiae

019115 (show subtarget assignments)	1	selected		603349	Kap123p: Karyopherin beta 4	1113	NUP:KAR (KARyopherin)	2BKU	15%	Saccharomyces cerevisiae

011587 (show subtarget assignments)	1	selected	D44469.1	604904	20kDa virulence-associated antigen [Rhod...	196	COV:NMR			Rhodococcus equi

019683 (show subtarget assignments)	1	selected		608515	chondroitin sulfate proteoglycan versica...	3396	IFN:LEC	1TDQ	2.5%	Homo sapiens

019684 (show subtarget assignments)	1	selected		623413	pancreatic stone protein [Homo sapiens]	166	IFN:LEC	1LIT	86.7%	Homo sapiens

019334 (show subtarget assignments)	1	selected		634086	sac3 gene	1301	NUP:NPC (NucleoPorin Complex)	3T5V	24.1%	Saccharomyces cerevisiae

019685 (show subtarget assignments)	1	selected		643090	NADH dehydrogenase [Arabidopsis thaliana...	218	IFN:LEC	2FUG	36.7%	Arabidopsis thaliana

019686 (show subtarget assignments)	1	selected		671562	tetranectin [Mus musculus]	202	IFN:LEC	1HTN	71.8%	Mus musculus

019297 (show subtarget assignments)	1	selected		671636	Nup57p [Saccharomyces cerevisiae]	541	NUP:NPC (NucleoPorin Complex)			Saccharomyces cerevisiae

019687 (show subtarget assignments)	1	selected		691754	phospholipase A2 receptor [Mus musculus]...	1487	IFN:LEC	2XR6	3.6%	Mus musculus

019332 (show subtarget assignments)	1	selected		732941	ASM4	459	NUP:NPC (NucleoPorin Complex)	3P3D	12.6%	Saccharomyces cerevisiae

019145 (show subtarget assignments)	1	selected		786617	histone H2A variant	171	NUP:CGO (CarGO)	1F66	51.5%	Schizosaccharomyces pombe

019111 (show subtarget assignments)	1	selected		793871	HRC1004	1004	NUP:KAR (KARyopherin)			Saccharomyces cerevisiae

019331 (show subtarget assignments)	1	cloned		825558	unknown	475	NUP:NPC (NucleoPorin Complex)	3P3D	9.9%	Saccharomyces cerevisiae

019321 (show subtarget assignments)	1	selected		854471	unknown, partial	711	NUP:NPC (NucleoPorin Complex)			Saccharomyces cerevisiae

019263 (show subtarget assignments)	1	selected		881346	hypoxia-inducible factor 1 alpha	826	NUP:CGO (CarGO)	1P97	9.9%	Homo sapiens

012353 (show subtarget assignments)	1	in_crystallization_trials		886071	syntaxin 5 [Homo sapiens]	301	CAD:SYN			Homo sapiens

019688 (show subtarget assignments)	1	selected		886890	brevican [Mus musculus]	883	IFN:LEC	1TDQ	8.6%	Mus musculus

010933 (show subtarget assignments)	1	purified		895923	paxillin [Gallus gallus]	559	CAD:ADL (Cell Adhesion Targets)	1RUT	9.3%	Gallus gallus

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