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Code | Context
            $json = $this->create_JSON($id, '___');
        } else {
            $json = $this->create_JSON($target_id, '___');
$target_id	=	"005691"
$split	=	"___"
$target	=	array(
	"Target" => array(
	"id" => "10105",
	"target_id" => "005691",
	"local_target_id" => "005691",
	"locus_tag" => null,
	"ncbi_gi" => "117306466",
	"ncbi_accession" => "AAI25405.1",
	"ncbi_geneid" => "101434",
	"ncbi_taxon_id" => "10090",
	"gene_name" => "Ceacam15",
	"common_name" => "Carcinoembryonic antigen-related cell adhesion molecule 15 [Mus musculus]",
	"ncbi_coded_by_region" => "BC125404.1:113..802",
	"ncbi_note" => null,
	"tigr_main_role_id" => null,
	"tigr_sub_role_id" => null,
	"comment" => null,
	"justification" => " Structural genomics of cell surface anchored Immunoglobulin Superfamily proteins that mediate immune response of T cells; human proteins and their orthologs",
	"sequence" => "MESPSLFLCKGLLLTASLLICWNWSTAALLTSKEMRFSAAEGAKVLLSVPDQEENLLSFSWYKGKDVNENFTIAHYKKSSDSLQLGKKVSGREEIYKDGSMMLRAITLEDTGFYTLQTFKAHGQQEVTHVHLQVYKIVTKPYLQLNHTRLKRKSASILTCVSPDTGVDINWFFNYKPLNATERITLSPEKRELTISPVWRADVGIYLCEVSNSFSSKKSYPLLMALAYG",
	"sequence_length" => "229",
	"dna_sequence" => "ATGGAGTCCCCTTCTTTGTTTCTCTGCAAAGGGCTCCTGCTCACAGCCTCACTTTTAATCTGCTGGAACTGGTCCACTGCAGCACTGCTGACCTCTAAAGAAATGCGCTTCTCAGCTGCTGAAGGGGCAAAGGTTCTTCTCTCTGTTCCTGACCAGGAGGAGAACCTCCTCTCCTTTTCCTGGTACAAAGGGAAGGATGTAAATGAAAATTTTACAATTGCACATTATAAAAAGTCCAGCGATTCGCTTCAACTTGGAAAGAAAGTCAGCGGCAGGGAAGAAATCTATAAGGATGGCTCCATGATGCTCCGGGCCATCACCCTGGAAGACACGGGATTCTACACGTTACAAACCTTTAAAGCACACGGCCAACAGGAAGTAACACATGTCCATCTCCAAGTATACAAGATCGTGACAAAGCCCTACCTCCAGCTCAACCACACTAGGCTGAAAAGGAAGAGTGCCTCAATTCTCACCTGCGTGTCGCCTGACACCGGAGTGGACATCAACTGGTTCTTCAATTACAAGCCCCTGAATGCCACTGAGAGGATCACGCTGTCACCTGAAAAGCGAGAGCTCACCATATCTCCTGTCTGGAGGGCAGATGTTGGGATCTATCTGTGCGAAGTCTCTAATTCCTTTAGTTCCAAGAAGTCTTATCCACTGCTCATGGCATTGGCTTATGGCTAA",
	"dna_sequence_ncbi" => null,
	"priority" => "1",
	"project" => "IFN:IgSF (Immune Function Network)",
	"selection_phase" => null,
	"date_selected" => "2011-01-26",
	"date_approved" => "2011-01-26",
	"completion_code" => null,
	"pi" => null,
	"tms" => null,
	"sp" => null,
	"core_genome" => null,
	"gram_minus_gene_homolog" => null,
	"gram_plus_gene_homolog" => null,
	"protease_motifs" => null,
	"glycosyl_group_metabolism" => null,
	"study_id" => null,
	"drug_target_homologs" => null,
	"virulence_genes" => null,
	"essential_genes_homologs" => null,
	"dna_binding_motifs" => null,
	"inserted" => "2011-01-26 21:10:18.042761+00",
	"updated" => "2011-01-26 21:10:18.042761+00",
	"species_taxon_id" => "10090",
	"ins_user_id" => "2",
	"upd_user_id" => null,
	"stage" => "in_pdb",
	"hidden" => false,
	"submitter_id" => null,
	"selection_db_id" => null,
	"dna_source_taxon_id" => null,
	"batch" => null,
	"genus_taxon_id" => "10088",
	"seguid" => null,
	"uniprot_id" => null,
	"ec" => null,
	"target_family" => null,
	"tar_designpool_id" => null,
	"community_nominated" => false,
	"partnership_nominated" => "IFN",
	"biomedical" => false,
	"metagenomic" => false,
	"structural_coverage" => false,
	"psi2" => false,
	"legacy" => false,
	"complex_with_biological_partner" => false,
	"functional_mutant" => false,
	"conformational_state" => false,
	"disease" => false,
	"individual_organism" => false,
	"protein_family_of_high_biological_importance" => false,
	"general_domain_family" => false,
	"eukaryotic_domain_family" => false,
	"first_structure_of_class" => false,
	"functional_follow_up" => false,
	"technology_development" => false,
	"membrane_protein" => false,
	"translated_dna_sequence" => "MESPSLFLCKGLLLTASLLICWNWSTAALLTSKEMRFSAAEGAKVLLSVPDQEENLLSFSWYKGKDVNENFTIAHYKKSSDSLQLGKKVSGREEIYKDGSMMLRAITLEDTGFYTLQTFKAHGQQEVTHVHLQVYKIVTKPYLQLNHTRLKRKSASILTCVSPDTGVDINWFFNYKPLNATERITLSPEKRELTISPVWRADVGIYLCEVSNSFSSKKSYPLLMALAYG",
	"family_coverage" => "12110",
	"family_coverage_date" => "2013-08-23",
	"distribution_lab" => null,
	"uniprot_accession" => null,
	"protocol_id" => "Target_selection",
	"ensembl_protein_id" => null,
	"ensembl_gene_id" => null,
	"type" => "single protein",
	"ligand_studies" => false,
	"protein_production_for_partnerships" => false,
	"single_domain_protein" => false,
	"multidomain_protein" => false,
	"oligomeric_protein" => false,
	"eukaryotic_protein" => false,
	"protein_protein_complex" => false,
	"protein_nucleic_acid_complex" => false,
	"protein_ligand_complex" => false,
	"de_novo_designed_protein" => false,
	"post_translational_modification" => false
),
	"ProteinClone" => array(
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)
)
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	"UVA",
	"NU",
	"UT",
	"WU"
)
$highlighted	=	array()
$paths	=	array(
	array(
	"Target___005691"
),
	array(
	"Target___005691",
	"ProteinClone___66191"
),
	array(
	"Target___005691",
	"ProteinClone___64634"
),
	array(
	"Target___005691",
	"ProteinClone___74270"
),
	array(
	"Target___005691",
	"ProteinClone___60980"
),
	array(
	"Target___005691",
	"ProteinClone___60980",
	"Expression___20005"
),
	array(
	"Target___005691",
	"ProteinClone___60980",
	"Expression___22098"
),
	array(
	"Target___005691",
	"ProteinClone___60980",
	"Expression___22116"
)
)
$tips	=	array(
	"Target___005691" => array(
	"title" => "Target 005691",
	"text" => "Carcinoembryonic antigen-related cell adhesion molecule 15 [Mus musculus]"
),
	"ProteinClone___66191" => array(
	"title" => "Clone",
	"text" => "sequence range: 31-145<br>vector: pPELB30<br>person: Mark Stead"
),
	"ProteinClone___64634" => array(
	"title" => "Clone",
	"text" => "sequence range: 151-225<br>vector: pIEX-sec-C<br>person: Brandan Hillerich"
),
	"ProteinClone___74270" => array(
	"title" => "Clone",
	"text" => "sequence range: 151-225<br>vector: pSGC-His<br>person: Mark Stead"
),
	"ProteinClone___60980" => array(
	"title" => "Clone",
	"text" => "sequence range: 26-140<br>vector: pIEX-sec-C<br>person: Brandan Hillerich"
),
	"Expression___20005" => array(
	"title" => "Expression",
	"text" => "expression level: 66.7%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37&deg;C)<br>person: Albe Chan"
),
	"Expression___22098" => array(
	"title" => "Expression",
	"text" => "expression level: 33.3%<br>solubility level: 33.3%<br>media: Express Five SFM (4000mL)<br>induction: IPTG (37&deg;C)<br>person: Scott Garforth"
),
	"Expression___22116" => array(
	"title" => "Expression",
	"text" => "expression level: 66.7%<br>solubility level: 33.3%<br>media: Express Five SFM (4000mL)<br>induction: IPTG (37&deg;C)<br>person: Scott Garforth"
),
	"Purification___3447" => array(
	"title" => "Purification",
	"text" => "final concentration: 1.38mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Brandan Hillerich"
)
)
$root	=	array(
	"id" => "Target___005691",
	"name" => "T  005691",
	"data" => array()
)
$clones	=	array(
	array(
	"id" => "ProteinClone___66191",
	"name" => "C  .08/01/12",
	"data" => array(),
	"children" => array()
),
	array(
	"id" => "ProteinClone___64634",
	"name" => "C  .07/02/12",
	"data" => array(),
	"children" => array()
),
	array(
	"id" => "ProteinClone___74270",
	"name" => "C  .01/14/13",
	"data" => array(),
	"children" => array()
)
)
$sclone	=	array(
	"id" => "60980",
	"target_id" => "005691",
	"clone_suffix" => "16464",
	"sequence_start" => "26",
	"sequence_end" => "140",
	"sequence" => "TAALLTSKEMRFSAAEGAKVLLSVPDQEENLLSFSWYKGKDVNENFTIAHYKKSSDSLQLGKKVSGREEIYKDGSMMLRAITLEDTGFYTLQTFKAHGQQEVTHVHLQVYKIVTK",
	"sequence_comments" => null,
	"local_protein_target_id" => "9467",
	"local_clone_plate_id" => null,
	"local_clone_id" => "16464",
	"experiment_date_start" => "2012-04-18",
	"experiment_date_end" => "2012-04-18",
	"staff_id" => "23",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Ligation Independent Cloning",
	"status" => "success",
	"vector" => "pIEX-sec-C",
	"pcr_primer_forward" => "AGGATTATGGAGGCACTGCAGCACTGCTGACCTC",
	"pcr_primer_backward" => "GATTGGAAGTAGAGGTTCTCTGCCTTTGTCACGATCTTGTATACTTGGAG",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2012-04-18 18:00:17.105688+00",
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	"update" => "2014-05-19 02:07:06.686604+00",
	"upd_user_id" => "1",
	"secondary_shipped_to_lab_id" => null,
	"secondary_shipped_date" => null,
	"external_source" => false,
	"mutation" => null,
	"bei_available" => false,
	"bei_number" => null,
	"reference_sequence_variance" => null,
	"confirmed_dna_sequence" => null,
	"confirmed_protein_sequence" => null,
	"present_in_lims" => false,
	"template_dna_sequence" => "ACTGCAGCACTGCTGACCTCTAAAGAAATGCGCTTCTCAGCTGCTGAAGGGGCAAAGGTTCTTCTCTCTGTTCCTGACCAGGAGGAGAACCTCCTCTCCTTTTCCTGGTACAAAGGGAAGGATGTAAATGAAAATTTTACAATTGCACATTATAAAAAGTCCAGCGATTCGCTTCAACTTGGAAAGAAAGTCAGCGGCAGGGAAGAAATCTATAAGGATGGCTCCATGATGCTCCGGGCCATCACCCTGGAAGACACGGGATTCTACACGTTACAAACCTTTAAAGCACACGGCCAACAGGAAGTAACACATGTCCATCTCCAAGTATACAAGATCGTGACAAAG",
	"lims_date" => "2012-04-18",
	"dummy" => false,
	"type" => null,
	"clone_annotation" => null,
	"optimized_dna_sequence" => null,
	"optimized" => false,
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	"Staff" => array(
	"id" => "23",
	"first_name" => "Brandan",
	"last_name" => "Hillerich",
	"email" => "brandan.hillerich@einstein.yu.edu",
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	"inserted" => "2010-11-16 22:19:15.566353+00",
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	"real_id" => "23"
),
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	"id" => "ProteinClone___60980",
	"name" => "C  .04/18/12",
	"data" => array(),
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	array(),
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	"id" => "22116",
	"target_id" => "005691",
	"expression_suffix" => "30604",
	"clone_id" => "60980",
	"clone_suffix" => "16464",
	"local_clone_id" => "16464",
	"local_protein_target_id" => "9467",
	"local_expression_id" => "30604",
	"experiment_date_start" => "2012-09-11",
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	"staff_id" => "355",
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	"protocol_id" => "Large scale insect expression- secreted",
	"status" => "success",
	"expression_organism" => "Insect",
	"expression_strain" => "High Five",
	"media_type" => "Express Five SFM",
	"media_volume" => "4000",
	"growth_temperature" => "37",
	"induction_temperature" => "37",
	"induction_reagent" => "IPTG",
	"experiment_type" => "production",
	"expression_level" => "66.6667",
	"solubility_level" => "33.3333",
	"inserted" => "2012-09-13 17:00:20.46913+00",
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	"update" => "2014-05-19 02:20:37.195346+00",
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	"first_name" => "Scott",
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	"email" => "scott.garforth@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
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	"pi" => false,
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	"inserted" => "2011-03-22 14:36:38.247355+00",
	"updated" => "2011-03-22 14:36:38.247355+00",
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	"manager" => false,
	"function" => null,
	"real_id" => "355"
),
	"Purification" => array(
	array()
)
)
$iexpr	=	array(
	"id" => "Expression___22116",
	"name" => "E  .09/11/12",
	"data" => array(),
	"children" => array()
)
$expression_level	=	"66.7%"
$solubility_level	=	"33.3%"
$spur	=	array(
	"id" => "3447",
	"target_id" => "005691",
	"purification_suffix" => "3977",
	"expression_id" => "22116",
	"local_expression_id" => "30604",
	"local_protein_target_id" => "9467",
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	"experiment_date_start" => "2012-09-19",
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	"staff_id" => "23",
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	"lab_id" => "AECOM",
	"protocol_id" => "Large Scale Insect- Secreted Batch Ni/Size",
	"status" => "success",
	"description" => "",
	"affinity_tag_status" => "na",
	"semet_status" => "native",
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	"final_buffer" => "",
	"final_concentration" => "1.38",
	"final_volume" => "8500",
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	"inserted" => "2012-09-19 16:01:06.301566+00",
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	"update" => "2014-05-19 02:29:19.874914+00",
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	"inserted" => "2010-11-16 22:19:15.566353+00",
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),
	"Hsqc" => array()
)
$ipur	=	array(
	"id" => "Purification___3447",
	"name" => "P  .09/19/12"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

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