Code |
Context $json = $this->create_JSON($id, '___');
} else {
$json = $this->create_JSON($target_id, '___');
$target_id = "005705"
$split = "___"
$target = array(
"Target" => array(
"id" => "10110",
"target_id" => "005705",
"local_target_id" => "005705",
"locus_tag" => null,
"ncbi_gi" => "89365967",
"ncbi_accession" => "AAI14436.1",
"ncbi_geneid" => "50937",
"ncbi_taxon_id" => "9606",
"gene_name" => "CDON",
"common_name" => "Cdon homolog (mouse) [Homo sapiens]",
"ncbi_coded_by_region" => "BC114435.1:33..3827",
"ncbi_note" => null,
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => " Structural genomics of cell surface anchored Immunoglobulin Superfamily proteins that mediate immune response of T cells; human proteins and their orthologs",
"sequence" => "MHPDLGPLCTLLYVTLTILCSSVSSDLAPYFTSEPLSAVQKLGGPVVLHCSAQPVTTRISWLHNGKTLDGNLEHIKIHQGTLTILSLNSSLLGYYQCLANNSIGAIVSGPATVSVAVLGDFGSSTKHVITAEEKSAGFIGCRVPESNPKAEVRYKIRGKWLKHSTENYLILPSGNLQILNVSLEDKGSYKCAAYNPVTHQLKVEPIGRKLLVSRPSSDDVHILHPTHSQALAVLSRSPVTLECVVSGVPAPQVYWLKDGQDIAPGSNWRRLYSHLATDSVDPADSGNYSCMAGNKSGDVKYVTYMVNVLEHASISKGLQDQIVSLGATVHFTCDVHGNPAPNCTWFHNAQPIHPSARHLTAGNGLKISGVTVEDVGMYQCVADNGIGFMHSTGRLEIENDGGFKPVIITAPVSAKVADGDFVTLSCNASGLPVPVIRWYDSHGLITSHPSQVLRSKSRKSQLSRPEGLNLEPVYFVLSQAGASSLHIQAVTQEHAGKYICEAANEHGTTQAEASLMVVPFETNTKAETVTLPDAAQNDDRSKRDGSETGLLSSFPVKVHPSAVESAPEKNASGISVPDAPIILSPPQTHTPDTYNLVWRAGKDGGLPINAYFVKYRKLDDGVGMLGSWHTVRVPGSENELHLAELEPSSLYEVLMVARSAAGEGQPAMLTFRTSKEKTASSKNTQASSPPVGIPKYPVVSEAANNNFGVVLTDSSRHSGVPEAPDRPTISTASETSVYVTWIPRANGGSPITAFKVEYKRMRTSNWLVAAEDIPPSKLSVEVRSLEPGSTYKFRVIAINHYGESFRSSASRPYQVVGFPNRFSSRPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETKVKRVPGASEYPVKDLSTPPNSLGSGGNVGPATSPARSSDMLYLIVGCVLGVMVLILMVFIAMCLWKNRQQNTIQKYDPPGYLYQGSDMNGQMVDYTTLSGASQINGNVHGGFLTNGGLSSGYSHLHHKVPNAVNGIVNGSLNGGLYSGHSNSLTRTHVDFEHPHHLVNGGGMYTAVPQIDPLECVNCRNCRNNNRCFTKTNSTFSSSPPPVVPVVAPYPQDGLEMKPLSHVKVPVCLTSAVPDCGQLPEESVKDNVEPVPTQRTCCQDIVNDVSSDGSEDPAEFSRGDSCAHSETENNIVSWNALILPPVPEGCAEKTMWSPPGIPLDSPTEVLQQPRET",
"sequence_length" => "1264",
"dna_sequence" => "ATGCATCCGGATCTTGGACCCTTATGTACACTGCTGTATGTTACTCTTACAATTCTGTGCTCTTCTGTGAGTTCAGACTTGGCACCTTATTTTACTTCTGAGCCGCTCTCTGCTGTCCAGAAACTTGGTGGACCTGTAGTACTGCATTGTTCTGCTCAACCTGTGACCACTCGTATCTCATGGCTGCATAACGGAAAAACATTGGATGGAAACCTGGAACATATTAAGATTCATCAGGGGACTCTGACAATTCTTTCTCTCAACTCCTCTCTTTTGGGTTACTACCAGTGCCTTGCCAACAATAGCATCGGTGCCATTGTGAGTGGCCCTGCGACAGTATCTGTGGCAGTTCTTGGTGATTTTGGTTCATCCACAAAGCATGTTATTACAGCAGAAGAAAAAAGTGCTGGTTTCATTGGCTGCAGGGTACCGGAGAGTAACCCCAAAGCTGAGGTGCGCTATAAAATCCGGGGAAAATGGCTGAAACATTCCACAGAGAATTACTTAATCCTTCCATCAGGAAATCTTCAGATTTTGAATGTATCCTTAGAGGACAAGGGATCATACAAATGTGCAGCTTATAATCCTGTCACACATCAATTAAAAGTTGAACCTATTGGCCGAAAGCTCCTTGTGAGTCGTCCTTCTTCAGATGATGTTCACATTCTTCACCCCACCCATTCACAGGCATTAGCTGTTCTTTCTCGTAGCCCTGTAACCTTGGAGTGTGTGGTGAGTGGGGTCCCGGCTCCTCAAGTGTATTGGCTAAAGGACGGGCAGGACATTGCACCAGGAAGCAACTGGAGAAGGTTGTATTCTCATCTTGCCACTGATAGCGTTGACCCGGCGGACTCCGGAAACTATTCCTGCATGGCGGGAAACAAGTCTGGAGATGTAAAATATGTGACTTACATGGTTAATGTACTTGAACATGCTTCCATTTCTAAAGGACTACAGGATCAGATAGTGTCTCTGGGTGCCACAGTACACTTTACCTGCGACGTTCATGGGAACCCAGCCCCCAACTGTACCTGGTTTCACAATGCACAGCCTATTCATCCTTCTGCACGACATCTAACTGCAGGAAACGGACTGAAAATCAGTGGGGTTACTGTGGAAGATGTTGGGATGTATCAGTGTGTAGCAGATAATGGGATTGGATTTATGCACTCTACTGGAAGACTTGAAATTGAAAATGACGGTGGATTCAAGCCAGTTATAATTACGGCACCAGTAAGTGCAAAGGTTGCAGACGGAGACTTTGTTACTCTGTCCTGCAATGCCAGTGGGCTGCCGGTTCCGGTCATTCGTTGGTATGACAGCCATGGATTGATAACCAGCCATCCATCTCAAGTCCTGAGATCGAAATCCCGAAAATCACAGTTATCAAGACCTGAGGGCTTGAACCTGGAGCCTGTGTACTTCGTCCTGTCCCAAGCTGGTGCAAGCTCTCTCCATATTCAGGCTGTGACTCAGGAACATGCGGGGAAATACATCTGCGAAGCTGCAAATGAACATGGTACCACACAGGCAGAAGCATCTCTCATGGTTGTTCCTTTTGAAACAAATACAAAAGCAGAGACAGTCACACTTCCTGATGCTGCTCAGAATGATGACAGAAGTAAGAGAGATGGTTCAGAAACTGGGTTACTGAGCTCATTTCCGGTGAAGGTCCATCCCAGTGCAGTGGAATCAGCACCAGAGAAAAACGCCAGCGGCATCTCTGTTCCTGATGCCCCCATCATACTGAGCCCCCCACAGACCCACACACCAGACACGTACAACCTGGTGTGGAGGGCAGGCAAGGATGGTGGGCTGCCCATCAATGCTTACTTTGTGAAGTATCGAAAGCTGGATGATGGGGTTGGCATGCTGGGAAGCTGGCACACGGTTCGAGTCCCAGGAAGTGAAAATGAGCTCCATTTAGCTGAGCTGGAGCCATCTAGTCTTTATGAAGTCTTGATGGTAGCAAGAAGCGCAGCAGGTGAAGGCCAACCTGCCATGCTTACCTTCCGAACCAGCAAAGAAAAAACAGCGTCATCAAAAAACACCCAGGCATCCTCTCCACCCGTGGGCATCCCTAAGTATCCCGTTGTTTCAGAGGCTGCAAACAACAATTTTGGAGTGGTACTTACAGATTCCTCTAGGCACAGTGGAGTTCCAGAGGCACCAGATCGGCCTACCATCTCCACTGCATCAGAGACATCAGTCTATGTCACTTGGATTCCTCGGGCAAACGGGGGTTCTCCAATCACTGCCTTCAAAGTCGAATATAAACGGATGAGGACCAGCAATTGGCTGGTGGCAGCTGAAGACATCCCTCCTTCCAAACTTTCAGTGGAAGTTCGTAGTTTAGAACCAGGTTCAACATACAAATTTAGGGTCATTGCCATCAACCATTATGGTGAGAGTTTTCGGAGTTCAGCATCTCGTCCTTATCAAGTGGTTGGGTTCCCCAATCGCTTTTCCAGCCGTCCAATAACTGGACCTCACATTGCATACACAGAGGCTGTCAGCGATACTCAGATCATGCTAAAGTGGACGTACATTCCATCAAGTAACAATAACACTCCCATTCAAGGATTTTATATCTATTACCGACCAACAGATAGTGACAATGACAGTGATTACAAGAGGGATGTTGTAGAAGGTTCAAAGCAGTGGCACATGATTGGCCACCTGCAGCCAGAAACCTCCTATGACATTAAAATGCAATGCTTCAATGAAGGAGGAGAAAGTGAATTTAGCAATGTGATGATCTGCGAGACTAAAGTGAAACGTGTTCCTGGAGCTTCTGAATATCCTGTCAAAGACTTGAGTACCCCTCCAAATTCTTTGGGAAGTGGAGGAAATGTGGGGCCTGCAACCAGCCCTGCCAGAAGCAGTGACATGTTATATCTGATCGTTGGCTGTGTGCTGGGCGTCATGGTCCTCATTCTGATGGTTTTCATTGCAATGTGCCTGTGGAAGAATCGCCAGCAGAATACCATACAAAAATATGACCCACCAGGATATCTCTACCAAGGATCAGATATGAACGGGCAGATGGTGGACTACACCACTCTCTCAGGAGCAAGTCAGATAAATGGAAATGTTCACGGAGGCTTCCTAACCAATGGCGGTCTCAGCAGTGGCTATTCCCACCTTCACCATAAGGTCCCCAATGCAGTCAATGGAATTGTGAATGGGAGCCTAAATGGAGGGCTTTACTCCGGGCACAGCAACTCTCTAACCAGGACACACGTGGATTTTGAACATCCTCATCATCTAGTGAATGGTGGTGGAATGTACACGGCCGTGCCTCAGATTGACCCTCTGGAGTGTGTTAACTGCCGAAATTGTCGAAACAACAATAGGTGTTTCACCAAAACCAACAGCACTTTCAGCAGCAGCCCTCCTCCTGTGGTCCCTGTGGTAGCACCTTATCCTCAGGATGGTTTGGAAATGAAGCCCCTCAGTCACGTGAAGGTGCCTGTATGCCTGACTTCCGCAGTCCCTGATTGTGGCCAGTTGCCGGAGGAGAGCGTCAAGGACAATGTGGAACCAGTCCCTACTCAGCGTACCTGCTGTCAGGACATTGTAAATGACGTCAGCTCTGATGGCTCAGAAGATCCAGCAGAGTTCAGCAGAGGAGACAGCTGTGCCCATTCAGAAACAGAGAACAACATTGTAAGTTGGAATGCTCTTATTTTGCCACCTGTCCCCGAGGGCTGTGCTGAGAAGACAATGTGGTCTCCACCTGGCATTCCTTTAGACAGCCCGACAGAGGTCCTTCAGCAGCCCCGGGAAACCTGA",
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "IFN:IgSF (Immune Function Network)",
"selection_phase" => null,
"date_selected" => "2011-01-26",
"date_approved" => "2011-01-26",
"completion_code" => null,
"pi" => null,
"tms" => null,
"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-01-26 21:10:19.782685+00",
"updated" => "2011-01-26 21:10:19.782685+00",
"species_taxon_id" => "9606",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "in_crystallization_trials",
"hidden" => false,
"submitter_id" => null,
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => null,
"genus_taxon_id" => "9605",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => "IFN",
"biomedical" => false,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => "MHPDLGPLCTLLYVTLTILCSSVSSDLAPYFTSEPLSAVQKLGGPVVLHCSAQPVTTRISWLHNGKTLDGNLEHIKIHQGTLTILSLNSSLLGYYQCLANNSIGAIVSGPATVSVAVLGDFGSSTKHVITAEEKSAGFIGCRVPESNPKAEVRYKIRGKWLKHSTENYLILPSGNLQILNVSLEDKGSYKCAAYNPVTHQLKVEPIGRKLLVSRPSSDDVHILHPTHSQALAVLSRSPVTLECVVSGVPAPQVYWLKDGQDIAPGSNWRRLYSHLATDSVDPADSGNYSCMAGNKSGDVKYVTYMVNVLEHASISKGLQDQIVSLGATVHFTCDVHGNPAPNCTWFHNAQPIHPSARHLTAGNGLKISGVTVEDVGMYQCVADNGIGFMHSTGRLEIENDGGFKPVIITAPVSAKVADGDFVTLSCNASGLPVPVIRWYDSHGLITSHPSQVLRSKSRKSQLSRPEGLNLEPVYFVLSQAGASSLHIQAVTQEHAGKYICEAANEHGTTQAEASLMVVPFETNTKAETVTLPDAAQNDDRSKRDGSETGLLSSFPVKVHPSAVESAPEKNASGISVPDAPIILSPPQTHTPDTYNLVWRAGKDGGLPINAYFVKYRKLDDGVGMLGSWHTVRVPGSENELHLAELEPSSLYEVLMVARSAAGEGQPAMLTFRTSKEKTASSKNTQASSPPVGIPKYPVVSEAANNNFGVVLTDSSRHSGVPEAPDRPTISTASETSVYVTWIPRANGGSPITAFKVEYKRMRTSNWLVAAEDIPPSKLSVEVRSLEPGSTYKFRVIAINHYGESFRSSASRPYQVVGFPNRFSSRPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETKVKRVPGASEYPVKDLSTPPNSLGSGGNVGPATSPARSSDMLYLIVGCVLGVMVLILMVFIAMCLWKNRQQNTIQKYDPPGYLYQGSDMNGQMVDYTTLSGASQINGNVHGGFLTNGGLSSGYSHLHHKVPNAVNGIVNGSLNGGLYSGHSNSLTRTHVDFEHPHHLVNGGGMYTAVPQIDPLECVNCRNCRNNNRCFTKTNSTFSSSPPPVVPVVAPYPQDGLEMKPLSHVKVPVCLTSAVPDCGQLPEESVKDNVEPVPTQRTCCQDIVNDVSSDGSEDPAEFSRGDSCAHSETENNIVSWNALILPPVPEGCAEKTMWSPPGIPLDSPTEVLQQPRET",
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => null,
"ensembl_gene_id" => null,
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
"ProteinClone" => array(
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array()
)
)
$filteredLabs = array(
"UVA",
"NU",
"UT",
"WU"
)
$highlighted = array()
$paths = array(
array(
"Target___005705"
),
array(
"Target___005705",
"ProteinClone___73875"
),
array(
"Target___005705",
"ProteinClone___73875",
"Expression___30953"
),
array(
"Target___005705",
"ProteinClone___73875",
"Expression___28870"
),
array(
"Target___005705",
"ProteinClone___65919"
),
array(
"Target___005705",
"ProteinClone___194356"
),
array(
"Target___005705",
"ProteinClone___71592"
),
array(
"Target___005705",
"ProteinClone___71592",
"Expression___32394"
),
array(
"Target___005705",
"ProteinClone___60563"
),
array(
"Target___005705",
"ProteinClone___60563",
"Expression___20028"
),
array(
"Target___005705",
"ProteinClone___71593"
),
array(
"Target___005705",
"ProteinClone___71593",
"Expression___32395"
),
array(
"Target___005705",
"ProteinClone___71596"
),
array(
"Target___005705",
"ProteinClone___71601"
),
array(
"Target___005705",
"ProteinClone___71601",
"Expression___32693"
),
array(
"Target___005705",
"ProteinClone___71601",
"Expression___32400"
),
array(
"Target___005705",
"ProteinClone___75750"
),
array(
"Target___005705",
"ProteinClone___71595"
),
array(
"Target___005705",
"ProteinClone___71595",
"Expression___32963"
)
)
$tips = array(
"Target___005705" => array(
"title" => "Target 005705",
"text" => "Cdon homolog (mouse) [Homo sapiens]"
),
"ProteinClone___73875" => array(
"title" => "Clone",
"text" => "sequence range: 36-109<br>vector: pDAD-SEC<br>person: Mark Stead"
),
"Expression___30953" => array(
"title" => "Expression",
"text" => "expression level: 0.0%<br>solubility level: 0.0%<br>media: Freestyle (6000mL)<br>induction: IPTG (37°C)<br>person: Scott Garforth"
),
"Expression___28870" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 100.0%<br>media: Freestyle (1mL)<br>induction: IPTG (37°C)<br>person: Scott Garforth"
),
"ProteinClone___65919" => array(
"title" => "Clone",
"text" => "sequence range: 36-925<br>vector: pMAM-Fc<br>person: Brandan Hillerich"
),
"ProteinClone___194356" => array(
"title" => "Clone",
"text" => "sequence range: 572-674<br>vector: pSNAP-SEC<br>person: Mark Stead"
),
"ProteinClone___71592" => array(
"title" => "Clone",
"text" => "sequence range: 226-312<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___32394" => array(
"title" => "Expression",
"text" => "expression level: 0.0%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"ProteinClone___60563" => array(
"title" => "Clone",
"text" => "sequence range: 36-109<br>vector: pIEX-sec-C<br>person: Brandan Hillerich"
),
"Expression___20028" => array(
"title" => "Expression",
"text" => "expression level: 0.0%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"ProteinClone___71593" => array(
"title" => "Clone",
"text" => "sequence range: 319-401<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___32395" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 33.3%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"ProteinClone___71596" => array(
"title" => "Clone",
"text" => "sequence range: 716-809<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"ProteinClone___71601" => array(
"title" => "Clone",
"text" => "sequence range: 319-520<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___32693" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: Express Five SFM (3000mL)<br>induction: IPTG (37°C)<br>person: Scott Garforth"
),
"Expression___32400" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 33.3%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"ProteinClone___75750" => array(
"title" => "Clone",
"text" => "sequence range: 36-109<br>vector: pDAD-SEC<br>person: Mark Stead"
),
"ProteinClone___71595" => array(
"title" => "Clone",
"text" => "sequence range: 572-674<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___32963" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 100.0%<br>media: Express Five SFM (3000mL)<br>induction: IPTG (37°C)<br>person: Scott Garforth"
),
"Purification___4462" => array(
"title" => "Purification",
"text" => "final concentration: 10.58mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Alan Glenn"
)
)
$root = array(
"id" => "Target___005705",
"name" => "T 005705",
"data" => array()
)
$clones = array(
array(
"id" => "ProteinClone___73875",
"name" => "C .01/07/13",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___65919",
"name" => "C .07/02/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___194356",
"name" => "C .10/09/13",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___71592",
"name" => "C .11/12/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___60563",
"name" => "C .04/13/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___71593",
"name" => "C .11/12/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___71596",
"name" => "C .11/12/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___71601",
"name" => "C .11/12/12",
"data" => array(),
"children" => array()
),
array(
"id" => "ProteinClone___75750",
"name" => "C .03/05/13",
"data" => array(),
"children" => array()
)
)
$sclone = array(
"id" => "71595",
"target_id" => "005705",
"clone_suffix" => "29905",
"sequence_start" => "572",
"sequence_end" => "674",
"sequence" => "SGISVPDAPIILSPPQTHTPDTYNLVWRAGKDGGLPINAYFVKYRKLDDGVGMLGSWHTVRVPGSENELHLAELEPSSLYEVLMVARSAAGEGQPAMITFRTS",
"sequence_comments" => null,
"local_protein_target_id" => "9472",
"local_clone_plate_id" => null,
"local_clone_id" => "29905",
"experiment_date_start" => "2012-11-12",
"experiment_date_end" => "2012-11-12",
"staff_id" => "430",
"other_people" => null,
"lab_id" => "AECOM",
"protocol_id" => "Ligation Independent Cloning",
"status" => "success",
"vector" => "pIEX-sec-C",
"pcr_primer_forward" => "AGGATTATGGAGGCAGCGGCATCTCTGTTCCTGATG",
"pcr_primer_backward" => "GATTGGAAGTAGAGGTTCTCTGCGCTGGTTCGGAAGGTAATCATGG",
"shipped_to_lab_id" => null,
"shipped_date" => null,
"inserted" => "2012-11-12 18:01:17.748782+00",
"ins_user_id" => null,
"update" => "2014-05-20 02:05:02.788336+00",
"upd_user_id" => "1",
"secondary_shipped_to_lab_id" => null,
"secondary_shipped_date" => null,
"external_source" => false,
"mutation" => null,
"bei_available" => false,
"bei_number" => null,
"reference_sequence_variance" => null,
"confirmed_dna_sequence" => null,
"confirmed_protein_sequence" => null,
"present_in_lims" => false,
"template_dna_sequence" => "AGCGGCATCTCTGTTCCTGATGCCCCCATCATACTGAGCCCCCCACAGACCCACACACCAGACACGTACAACCTGGTGTGGAGGGCAGGCAAGGATGGTGGGCTGCCCATCAATGCTTACTTTGTGAAGTATCGAAAGCTGGATGATGGGGTTGGCATGCTGGGAAGCTGGCACACGGTTCGAGTCCCAGGAAGTGAAAATGAGCTCCATTTAGCTGAGCTGGAGCCATCTAGTCTTTATGAAGTCTTGATGGTAGCAAGAAGCGCAGCAGGTGAAGGCCAACCTGCCATGATTACCTTCCGAACCAGC",
"lims_date" => "2012-11-12",
"dummy" => false,
"type" => null,
"clone_annotation" => null,
"optimized_dna_sequence" => null,
"optimized" => false,
"truncated" => false,
"synthetic" => false,
"Staff" => array(
"id" => "430",
"first_name" => "Mark",
"last_name" => "Stead",
"email" => "mark.stead@einstein.yu.edu",
"phone" => null,
"lab_id" => "AECOM",
"responsibility" => null,
"databases" => false,
"admin" => false,
"protein_production" => false,
"crystallography" => false,
"pi" => false,
"lab_contact" => false,
"inserted" => "2012-02-28 22:00:05.514568+00",
"updated" => "2012-02-28 22:00:05.514568+00",
"institution_id" => null,
"middle_initials" => null,
"active" => true,
"manager" => false,
"function" => null,
"real_id" => "430"
),
"Expression" => array(
array(),
array()
)
)
$iclone = array(
"id" => "ProteinClone___71595",
"name" => "C .11/12/12",
"data" => array(),
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$ipur = array(
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Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83