Code |
Context $json = $this->create_JSON($id, '___');
} else {
$json = $this->create_JSON($target_id, '___');
$target_id = "012345"
$split = "___"
$target = array(
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"id" => "12613",
"target_id" => "012345",
"local_target_id" => "012345",
"locus_tag" => null,
"ncbi_gi" => "170172516",
"ncbi_accession" => "NP_031967.2",
"ncbi_geneid" => "13852",
"ncbi_taxon_id" => "10090",
"gene_name" => "Stx2",
"common_name" => "syntaxin-2 [Mus musculus]",
"ncbi_coded_by_region" => "NM_007941.2:142..1011",
"ncbi_note" => null,
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => "Cell:cell adhesive interactions involving the syntaxin family of proteins",
"sequence" => "MRDRLPDLTACRTNDDGDTAVVIVEKDHFMDGFFHQVEEIRSSIARIAQHVEDVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANRIRGKLKSIEQSCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEAQILFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFISDIISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWIIAAVAVAVIAVLALIIGLSVGK",
"sequence_length" => "289",
"dna_sequence" => "ATGAGAGACCGCTTGCCTGACTTGACTGCTTGCCGCACTAACGATGATGGAGACACCGCTGTTGTGATCGTCGAAAAGGACCACTTCATGGACGGTTTCTTCCACCAGGTCGAGGAAATCAGGTCCTCTATCGCTAGAATCGCCCAACACGTCGAGGATGTTAAGAAGAACCACTCTATCATCCTGAGCGCCCCCAACCCTGAGGGCAAGATCAAGGAGGAATTGGAGGACCTGAACAAGGAAATCAAGAAGACCGCTAACCGTATCCGCGGCAAGCTCAAGTCAATCGAGCAGTCGTGCGACCAAGATGAAAACGGAAACCGTACCAGCGTCGACTTGCGCATCCGTCGCACTCAGCACTCGGTGCTGTCCCGTAAGTTCGTTGATGTGATGACTGAGTACAACGAAGCCCAAATCCTCTTCAGGGAGAGATCCAAGGGACGTATCCAGCGCCAATTGGAAATCACAGGTCGCACCACTACAGACGATGAGCTCGAGGAAATGTTGGAATCCGGAAAGCCCTCTATCTTCATCAGCGACATCATCAGCGATTCACAGATCACTAGGCAAGCCCTGAACGAGATCGAATCAAGACACAAGGACATCATGAAGCTGGAGACATCGATCCGCGAGCTCCACGAAATGTTCATGGATATGGCTATGTTCGTTGAGACCCAGGGCGAAATGGTGAACAACATCGAGAGGAACGTGGTCAACTCAGTGGACTACGTCGAGCACGCTAAGGAGGAAACCAAGAAGGCCATCAAGTACCAGTCTAAGGCTAGGAGAAAGAAGTGGATCATCGCTGCCGTCGCTGTTGCCGTGATCGCTGTCCTGGCCCTCATCATCGGTCTGTCTGTTGGCAAGTAA",
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "CAD:SYN",
"selection_phase" => null,
"date_selected" => "2011-06-28",
"date_approved" => "2011-06-28",
"completion_code" => null,
"pi" => null,
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"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-07-25 21:03:04.003634+00",
"updated" => "2011-07-25 21:03:04.003634+00",
"species_taxon_id" => "10090",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "in_crystallization_trials",
"hidden" => false,
"submitter_id" => null,
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => "syntaxin_batch1",
"genus_taxon_id" => "10088",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => "CELLMAT",
"biomedical" => false,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => null,
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => null,
"ensembl_gene_id" => null,
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
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)
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"UVA",
"NU",
"UT",
"WU"
)
$highlighted = array()
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array(
"Target___012345"
),
array(
"Target___012345",
"ProteinClone___30287"
),
array(
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"ProteinClone___30287",
"Expression___4170"
),
array(
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"ProteinClone___30287",
"Expression___8471"
),
array(
"Target___012345",
"ProteinClone___30287",
"Expression___8461"
),
array(
"Target___012345",
"ProteinClone___30287",
"Expression___9987"
),
array(
"Target___012345",
"ProteinClone___30292"
),
array(
"Target___012345",
"ProteinClone___30292",
"Expression___4220"
),
array(
"Target___012345",
"ProteinClone___30292",
"Expression___4051"
),
array(
"Target___012345",
"ProteinClone___30291"
),
array(
"Target___012345",
"ProteinClone___30291",
"Expression___4221"
),
array(
"Target___012345",
"ProteinClone___30291",
"Expression___10018"
),
array(
"Target___012345",
"ProteinClone___30291",
"Expression___4052"
)
)
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"Target___012345" => array(
"title" => "Target 012345",
"text" => "syntaxin-2 [Mus musculus]"
),
"ProteinClone___30287" => array(
"title" => "Clone",
"text" => "sequence range: 24-150<br>vector: pSGC<br>person: Brandan Hillerich"
),
"Expression___4170" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 100.0%<br>media: PASM-5052 (0.75mL)<br>induction: IPTG (37°C)<br>person: Brandan Hillerich"
),
"Expression___8471" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-5052 (2000mL)<br>induction: IPTG (37°C)<br>person: Anthony Gizzi"
),
"Expression___8461" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-5052 (2000mL)<br>induction: IPTG (37°C)<br>person: Anthony Gizzi"
),
"Expression___9987" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-Semet (2000mL)<br>induction: Autoinduction (22°C)<br>person: James Hammonds"
),
"ProteinClone___30292" => array(
"title" => "Clone",
"text" => "sequence range: 2-267<br>vector: CHS30<br>person: Brandan Hillerich"
),
"Expression___4220" => array(
"title" => "Expression",
"text" => "expression level: 33.3%<br>solubility level: 33.3%<br>media: PASM-5052 (0.75mL)<br>induction: IPTG (37°C)<br>person: Brandan Hillerich"
),
"Expression___4051" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 0.0%<br>media: PASM-Semet (2000mL)<br>induction: Autoinduction (22°C)<br>person: James Hammonds"
),
"ProteinClone___30291" => array(
"title" => "Clone",
"text" => "sequence range: 2-172<br>vector: CHS30<br>person: Brandan Hillerich"
),
"Expression___4221" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 100.0%<br>media: PASM-5052 (0.75mL)<br>induction: IPTG (37°C)<br>person: Brandan Hillerich"
),
"Expression___10018" => array(
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),
"Expression___4052" => array(
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"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-Semet (2000mL)<br>induction: Autoinduction (22°C)<br>person: James Hammonds"
),
"Purification___749" => array(
"title" => "Purification",
"text" => "final concentration: 3.45mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Anthony Gizzi"
)
)
$root = array(
"id" => "Target___012345",
"name" => "T 012345",
"data" => array()
)
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array(
"id" => "ProteinClone___30287",
"name" => "C .07/20/11",
"data" => array(),
"children" => array()
),
array(
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"target_id" => "012345",
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"sequence" => "RDRLPDLTACRTNDDGDTAVVIVEKDHFMDGFFHQVEEIRSSIARIAQHVEDVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANRIRGKLKSIEQSCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEAQILFRERSKGRIQRQLEITGRTTTDDELEEMLESG",
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"status" => "success",
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"shipped_to_lab_id" => null,
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"Hsqc" => array()
)
$ipur = array(
"id" => "Purification___749",
"name" => "P .08/05/11"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83