Code |
Context $json = $this->create_JSON($id, '___');
} else {
$json = $this->create_JSON($target_id, '___');
$target_id = "012623"
$split = "___"
$target = array(
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"target_id" => "012623",
"local_target_id" => "012623",
"locus_tag" => null,
"ncbi_gi" => null,
"ncbi_accession" => null,
"ncbi_geneid" => null,
"ncbi_taxon_id" => "9615",
"gene_name" => null,
"common_name" => "costimulatory molecule B7 receptor CD28",
"ncbi_coded_by_region" => null,
"ncbi_note" => null,
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => " Structural genomics of cell surface anchored Immunoglobulin Superfamily proteins that mediate immune response of T cells; human proteins and their orthologs",
"sequence" => "MILRLLLALNFFPSIQVTENKILVKQLPRLVVYNNEVNLSCKYTYNLFSKEFRASLYKGVDSAVEVCVVNGNYSHQPQFYSSTGFDCDGKLGNETVTFYLRNLFVNQTDIYFCKIEVMYPPPYIGNEKSNGTIIHVKEKHLCPDELFPDSSKPFWALVVVGAVLVFYSLLVTVALCAYWIKSKSSRILQSDYMNMTPRRPGPTRRHYQPYAPARDFAAYRS",
"sequence_length" => "221",
"dna_sequence" => "ATGATCCTCAGGCTGCTTCTGGCCCTCAACTTCTTCCCCTCGATTCAAGTAACAGAAAACAAGATTTTGGTGAAGCAGTTGCCCAGGCTTGTGGTATACAACAATGAGGTCAATCTGAGCTGCAAGTATACCTACAACCTCTTCTCAAAGGAGTTCCGGGCATCCCTTTATAAGGGAGTAGATAGTGCTGTGGAAGTCTGTGTTGTGAATGGAAATTACTCCCATCAGCCTCAGTTCTACTCAAGTACAGGATTCGACTGTGATGGAAAACTGGGCAATGAAACAGTGACATTCTACCTCCGGAATTTGTTCGTTAACCAAACGGATATTTACTTTTGCAAAATTGAGGTCATGTATCCACCTCCTTACATTGGCAATGAGAAGAGCAATGGGACCATTATCCATGTGAAAGAAAAACATCTTTGTCCAGATGAGCTGTTTCCTGATTCTTCTAAGCCATTTTGGGCACTGGTGGTGGTTGGTGCAGTCCTAGTTTTCTATAGCTTGCTAGTAACAGTGGCTCTTTGTGCCTACTGGATAAAGAGTAAGAGTAGCAGGATCCTTCAGAGTGACTACATGAACATGACCCCCCGGAGGCCGGGGCCCACCCGAAGGCACTACCAACCCTATGCCCCAGCACGCGACTTTGCAGCATACCGCTCC",
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "IFN:IgSF (Immune Function Network)",
"selection_phase" => null,
"date_selected" => "2011-09-08",
"date_approved" => "2011-09-08",
"completion_code" => null,
"pi" => null,
"tms" => null,
"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-09-16 16:43:44.145679+00",
"updated" => "2011-09-16 16:43:44.145679+00",
"species_taxon_id" => "9612",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "in_crystallization_trials",
"hidden" => false,
"submitter_id" => "212",
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => "PSI:IFN:IGSF batch 1",
"genus_taxon_id" => "9611",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => "IFN",
"biomedical" => false,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => null,
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => "ENSCAFP00000018952",
"ensembl_gene_id" => "ENSCAFG00000012872",
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
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)
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"UVA",
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"UT",
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$highlighted = array()
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"Target___012623"
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array(
"Target___012623",
"ProteinClone___69894"
),
array(
"Target___012623",
"ProteinClone___69894",
"Expression___30553"
),
array(
"Target___012623",
"ProteinClone___69894",
"Expression___25270"
),
array(
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"ProteinClone___69894",
"Expression___23529"
),
array(
"Target___012623",
"ProteinClone___181825"
),
array(
"Target___012623",
"ProteinClone___52071"
),
array(
"Target___012623",
"ProteinClone___181831"
),
array(
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"ProteinClone___181824"
),
array(
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),
array(
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),
array(
"Target___012623",
"ProteinClone___77026"
),
array(
"Target___012623",
"ProteinClone___77026",
"Expression___32785"
),
array(
"Target___012623",
"ProteinClone___77282"
),
array(
"Target___012623",
"ProteinClone___77282",
"Expression___33467"
),
array(
"Target___012623",
"ProteinClone___77282",
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array(
"Target___012623",
"ProteinClone___181830"
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array(
"Target___012623",
"ProteinClone___182675"
),
array(
"Target___012623",
"ProteinClone___182675",
"Expression___59688"
),
array(
"Target___012623",
"ProteinClone___182675",
"Expression___60697"
),
array(
"Target___012623",
"ProteinClone___182675",
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)
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"Target___012623" => array(
"title" => "Target 012623",
"text" => "costimulatory molecule B7 receptor CD28"
),
"ProteinClone___69894" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pAVITAG-Tagless<br>person: Mark Stead"
),
"Expression___30553" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-5052 (2000mL)<br>induction: IPTG (37°C)<br>person: Brandan Hillerich"
),
"Expression___25270" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-5052 (2000mL)<br>induction: IPTG (37°C)<br>person: Brandan Hillerich"
),
"Expression___23529" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 0.0%<br>media: PASM-5052 (0.75mL)<br>induction: IPTG (37°C)<br>person: Sukanya Chowdhury"
),
"ProteinClone___181825" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___52071" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pSGC-His<br>person: Brandan Hillerich"
),
"ProteinClone___181831" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___181824" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___181832" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___181833" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___77026" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPSC<br>person: Mark Stead"
),
"Expression___32785" => array(
"title" => "Expression",
"text" => "expression level: 33.3%<br>solubility level: 0.0%<br>media: PSAM-5052 (0.75mL)<br>induction: IPTG (37°C)<br>person: Mark Stead"
),
"ProteinClone___77282" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___33467" => array(
"title" => "Expression",
"text" => "expression level: 0.0%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"Expression___33556" => array(
"title" => "Expression",
"text" => "expression level: 0.0%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"ProteinClone___181830" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pNYCOMPS-Tagless<br>person: Mark Stead"
),
"ProteinClone___182675" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: pIEX-sec-C<br>person: Mark Stead"
),
"Expression___59688" => array(
"title" => "Expression",
"text" => "expression level: 100.0%<br>solubility level: 0.0%<br>media: Express Five SFM (4mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"Expression___60697" => array(
"title" => "Expression",
"text" => "expression level: N/A<br>solubility level: N/A<br>media: SF900 II (3000mL)<br>induction: IPTG (37°C)<br>person: Albe Chan"
),
"Expression___60984" => array(
"title" => "Expression",
"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: SF900 II (3000mL)<br>induction: IPTG (37°C)<br>person: Scott Garforth"
),
"Purification___5527" => array(
"title" => "Purification",
"text" => "final concentration: 0mg/mL<br>SeMet: native<br>affinity tag: na<br>person: John Attonito"
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"name" => "T 012623",
"data" => array()
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"id" => "ProteinClone___69894",
"name" => "C .10/10/12",
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$ipur = array(
"id" => "Purification___5527",
"name" => "P .03/31/14"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83
