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Code | Context
            $json = $this->create_JSON($id, '___');
        } else {
            $json = $this->create_JSON($target_id, '___');
$target_id	=	"013112"
$split	=	"___"
$target	=	array(
	"Target" => array(
	"id" => "13541",
	"target_id" => "013112",
	"local_target_id" => "013112",
	"locus_tag" => "Caur_2839",
	"ncbi_gi" => "163669674",
	"ncbi_accession" => "ABY36040.1",
	"ncbi_geneid" => null,
	"ncbi_taxon_id" => "324602",
	"gene_name" => null,
	"common_name" => "lipoic acid synthetase [Chloroflexus aurantiacus J-10-fl]",
	"ncbi_coded_by_region" => "CP000909.1:3798741..3799661",
	"ncbi_note" => "KEGG: rrs:RoseRS_1042 lipoic acid synthetase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB",
	"tigr_main_role_id" => null,
	"tigr_sub_role_id" => null,
	"comment" => null,
	"justification" => "Symbiotic and global nitrogen fixation based on ortholog expansion from Sinorhizobium",
	"sequence" => "MAELIPLNEVGVAQPASGAVNRPRRPEWLKARAPGGVNYHDVLRLMREKNLHTVCEEARCPNIGECWNHRTATFLLLGDICTRGCRYCAIGKGKPKPIDENEPERVAESVAHLKLKFAVLTSVNRDDVPDGGAHIFARTIELIRQKVPDCKVEVLIPDFDGNWDALATVLAAEPDVLNHNIETVPRLFRRFRPRAKFEQSIELLARARAARPKLVTKSGMMVGAGETNEEVYEVIDRLRSVDVNVLTIGQYLAPDASYWPVHRYVTPAEFAEFRSYALARGFTHVESGPLVRSSYNAHLHVGAAQH",
	"sequence_length" => "306",
	"dna_sequence" => "ATGGCAGAACTTATTCCGCTAAATGAGGTAGGTGTCGCGCAACCGGCATCAGGTGCAGTCAATCGGCCACGCCGCCCGGAGTGGTTGAAAGCGCGGGCACCGGGTGGGGTGAATTATCACGATGTGTTGCGCTTGATGCGCGAAAAGAATCTGCATACGGTCTGCGAAGAAGCCCGCTGTCCAAATATCGGTGAGTGCTGGAATCATCGCACTGCCACCTTTCTCTTGCTCGGTGATATTTGTACCCGTGGTTGTCGCTACTGCGCTATCGGTAAAGGGAAACCAAAGCCAATTGACGAGAACGAGCCGGAGCGGGTTGCCGAGTCGGTTGCTCACCTGAAACTCAAGTTTGCCGTGCTCACGTCGGTCAACCGTGATGATGTACCCGACGGTGGTGCGCATATTTTTGCCCGTACTATCGAGCTTATCCGCCAGAAGGTGCCTGATTGCAAGGTCGAAGTGCTCATCCCCGATTTCGATGGTAATTGGGATGCACTGGCGACGGTGCTGGCCGCCGAACCCGATGTGCTGAACCACAATATCGAGACGGTACCGCGTCTGTTCCGGCGGTTTCGACCACGCGCTAAATTCGAGCAGAGTATTGAATTGCTGGCCAGAGCACGGGCTGCTCGCCCCAAGCTGGTTACCAAGAGTGGCATGATGGTCGGTGCCGGTGAGACCAACGAAGAGGTGTACGAGGTGATTGATCGTCTGCGCAGTGTTGATGTGAATGTGCTGACGATTGGTCAGTATCTGGCACCCGATGCGAGCTATTGGCCGGTGCATCGCTATGTCACGCCCGCCGAGTTTGCTGAGTTTCGCAGCTACGCGCTGGCCCGTGGTTTTACGCACGTTGAGAGCGGGCCGCTGGTGCGGTCGAGTTACAATGCCCATCTGCACGTGGGCGCTGCCCAACATTAG",
	"dna_sequence_ncbi" => null,
	"priority" => "1",
	"project" => "BIO:N2F",
	"selection_phase" => null,
	"date_selected" => "2011-09-26",
	"date_approved" => "2011-09-26",
	"completion_code" => null,
	"pi" => null,
	"tms" => null,
	"sp" => null,
	"core_genome" => null,
	"gram_minus_gene_homolog" => null,
	"gram_plus_gene_homolog" => null,
	"protease_motifs" => null,
	"glycosyl_group_metabolism" => null,
	"study_id" => null,
	"drug_target_homologs" => null,
	"virulence_genes" => null,
	"essential_genes_homologs" => null,
	"dna_binding_motifs" => null,
	"inserted" => "2011-10-05 19:39:14.27316+00",
	"updated" => "2011-10-05 19:39:14.27316+00",
	"species_taxon_id" => "1108",
	"ins_user_id" => "2",
	"upd_user_id" => null,
	"stage" => "in_crystallization_trials",
	"hidden" => false,
	"submitter_id" => null,
	"selection_db_id" => null,
	"dna_source_taxon_id" => null,
	"batch" => "N2F 2011-09-30",
	"genus_taxon_id" => "1107",
	"seguid" => null,
	"uniprot_id" => null,
	"ec" => null,
	"target_family" => null,
	"tar_designpool_id" => null,
	"community_nominated" => false,
	"partnership_nominated" => null,
	"biomedical" => true,
	"metagenomic" => false,
	"structural_coverage" => false,
	"psi2" => false,
	"legacy" => false,
	"complex_with_biological_partner" => false,
	"functional_mutant" => false,
	"conformational_state" => false,
	"disease" => false,
	"individual_organism" => false,
	"protein_family_of_high_biological_importance" => false,
	"general_domain_family" => false,
	"eukaryotic_domain_family" => false,
	"first_structure_of_class" => false,
	"functional_follow_up" => false,
	"technology_development" => false,
	"membrane_protein" => false,
	"translated_dna_sequence" => null,
	"family_coverage" => null,
	"family_coverage_date" => null,
	"distribution_lab" => null,
	"uniprot_accession" => null,
	"protocol_id" => "Target_selection",
	"ensembl_protein_id" => null,
	"ensembl_gene_id" => null,
	"type" => "single protein",
	"ligand_studies" => false,
	"protein_production_for_partnerships" => false,
	"single_domain_protein" => false,
	"multidomain_protein" => false,
	"oligomeric_protein" => false,
	"eukaryotic_protein" => false,
	"protein_protein_complex" => false,
	"protein_nucleic_acid_complex" => false,
	"protein_ligand_complex" => false,
	"de_novo_designed_protein" => false,
	"post_translational_modification" => false
),
	"ProteinClone" => array(
	array(),
	array()
)
)
$filteredLabs	=	array(
	"UVA",
	"NU",
	"UT",
	"WU"
)
$highlighted	=	array()
$paths	=	array(
	array(
	"Target___013112"
),
	array(
	"Target___013112",
	"ProteinClone___55163"
),
	array(
	"Target___013112",
	"ProteinClone___55163",
	"Expression___6183"
),
	array(
	"Target___013112",
	"ProteinClone___55163",
	"Expression___6335"
)
)
$tips	=	array(
	"Target___013112" => array(
	"title" => "Target 013112",
	"text" => "lipoic acid synthetase [Chloroflexus aurantiacus J-10-fl]"
),
	"ProteinClone___55163" => array(
	"title" => "Clone",
	"text" => "sequence range: 0-0<br>vector: pSGC-His<br>person: Brandan Hillerich"
),
	"Expression___6183" => array(
	"title" => "Expression",
	"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-5052 (0.75mL)<br>induction: IPTG (37&deg;C)<br>person: Brandan Hillerich"
),
	"Expression___6335" => array(
	"title" => "Expression",
	"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-SEMET (2000mL)<br>induction: IPTG (37&deg;C)<br>person: James Hammonds"
),
	"Purification___1827" => array(
	"title" => "Purification",
	"text" => "final concentration: 0.6514mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Alan Glenn"
)
)
$root	=	array(
	"id" => "Target___013112",
	"name" => "T  013112",
	"data" => array()
)
$clones	=	array()
$sclone	=	array(
	"id" => "55163",
	"target_id" => "013112",
	"clone_suffix" => "10042",
	"sequence_start" => "0",
	"sequence_end" => "0",
	"sequence" => "AELIPLNEVGVAQPASGAVNRPRRPEWLKARAPGGVNYHDVLRLMREKNLHTVCEEARCPNIGECWNHRTATFLLLGDICTRGCRYCAIGKGKPKPIDENEPERVAESVAHLKLKFAVLTSVNRDDVPDGGAHIFARTIELIRQKVPDCKVEVLIPDFDGNWDALATVLAAEPDVLNHNIETVPRLFRRFRPRAKFEQSIELLARARAARPKLVTKSGMMVGAGETNEEVYEVIDRLRSVDVNVLTIGQYLAPDASYWPVHRYVTPAEFAEFRSYALARGFTHVESGPLVRSSYNAHLHVGAAQH",
	"sequence_comments" => null,
	"local_protein_target_id" => "14486",
	"local_clone_plate_id" => null,
	"local_clone_id" => "10042",
	"experiment_date_start" => "2011-10-19",
	"experiment_date_end" => "2011-10-19",
	"staff_id" => "23",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Ligation Independent Cloning",
	"status" => "success",
	"vector" => "pSGC-His",
	"pcr_primer_forward" => "TACTTCCAATCCATGGCAGAACTTATTCCGCTAAATGAGG",
	"pcr_primer_backward" => "TATCCACCTTTACTGTTAATGTTGGGCAGCGCCCACG",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2011-10-19 14:02:00.740485+00",
	"ins_user_id" => null,
	"update" => "2014-05-20 02:01:36.012306+00",
	"upd_user_id" => "1",
	"secondary_shipped_to_lab_id" => null,
	"secondary_shipped_date" => null,
	"external_source" => false,
	"mutation" => null,
	"bei_available" => false,
	"bei_number" => null,
	"reference_sequence_variance" => null,
	"confirmed_dna_sequence" => null,
	"confirmed_protein_sequence" => null,
	"present_in_lims" => false,
	"template_dna_sequence" => "GCAGAACTTATTCCGCTAAATGAGGTAGGTGTCGCGCAACCGGCATCAGGTGCAGTCAATCGGCCACGCCGCCCGGAGTGGTTGAAAGCGCGGGCACCGGGTGGGGTGAATTATCACGATGTGTTGCGCTTGATGCGCGAAAAGAATCTGCATACGGTCTGCGAAGAAGCCCGCTGTCCAAATATCGGTGAGTGCTGGAATCATCGCACTGCCACCTTTCTCTTGCTCGGTGATATTTGTACCCGTGGTTGTCGCTACTGCGCTATCGGTAAAGGGAAACCAAAGCCAATTGACGAGAACGAGCCGGAGCGGGTTGCCGAGTCGGTTGCTCACCTGAAACTCAAGTTTGCCGTGCTCACGTCGGTCAACCGTGATGATGTACCCGACGGTGGTGCGCATATTTTTGCCCGTACTATCGAGCTTATCCGCCAGAAGGTGCCTGATTGCAAGGTCGAAGTGCTCATCCCCGATTTCGATGGTAATTGGGATGCACTGGCGACGGTGCTGGCCGCCGAACCCGATGTGCTGAACCACAATATCGAGACGGTACCGCGTCTGTTCCGGCGGTTTCGACCACGCGCTAAATTCGAGCAGAGTATTGAATTGCTGGCCAGAGCACGGGCTGCTCGCCCCAAGCTGGTTACCAAGAGTGGCATGATGGTCGGTGCCGGTGAGACCAACGAAGAGGTGTACGAGGTGATTGATCGTCTGCGCAGTGTTGATGTGAATGTGCTGACGATTGGTCAGTATCTGGCACCCGATGCGAGCTATTGGCCGGTGCATCGCTATGTCACGCCCGCCGAGTTTGCTGAGTTTCGCAGCTACGCGCTGGCCCGTGGTTTTACGCACGTTGAGAGCGGGCCGCTGGTGCGGTCGAGTTACAATGCCCATCTGCACGTGGGCGCTGCCCAACAT",
	"lims_date" => "2011-10-19",
	"dummy" => false,
	"type" => null,
	"clone_annotation" => null,
	"optimized_dna_sequence" => null,
	"optimized" => false,
	"truncated" => false,
	"synthetic" => false,
	"Staff" => array(
	"id" => "23",
	"first_name" => "Brandan",
	"last_name" => "Hillerich",
	"email" => "brandan.hillerich@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-11-16 22:19:15.566353+00",
	"updated" => "2010-11-16 22:19:15.566353+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "23"
),
	"Expression" => array(
	array(),
	array()
)
)
$iclone	=	array(
	"id" => "ProteinClone___55163",
	"name" => "C  .10/19/11",
	"data" => array(),
	"children" => array(
	array()
)
)
$sexpr	=	array(
	"id" => "6335",
	"target_id" => "013112",
	"expression_suffix" => "8864",
	"clone_id" => "55163",
	"clone_suffix" => "10042",
	"local_clone_id" => "10042",
	"local_protein_target_id" => "14486",
	"local_expression_id" => "8864",
	"experiment_date_start" => "2011-10-28",
	"experiment_date_end" => "2011-10-28",
	"staff_id" => "216",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "LEX48 PASM-5052 Large Scale Expression",
	"status" => "success",
	"expression_organism" => "E. coli",
	"expression_strain" => "BL21 (DE3) RIL",
	"media_type" => "PASM-SEMET",
	"media_volume" => "2000",
	"growth_temperature" => "37",
	"induction_temperature" => "37",
	"induction_reagent" => "IPTG",
	"experiment_type" => "production",
	"expression_level" => "66.6667",
	"solubility_level" => "66.6667",
	"inserted" => "2011-10-28 21:05:03.925065+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:14:56.94997+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2011-10-28",
	"dummy" => false,
	"Staff" => array(
	"id" => "216",
	"first_name" => "James",
	"last_name" => "Hammonds",
	"email" => "james.hammonds@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-12-16 18:46:05.227363+00",
	"updated" => "2010-12-16 18:46:05.227363+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "216"
),
	"Purification" => array(
	array()
)
)
$iexpr	=	array(
	"id" => "Expression___6335",
	"name" => "E  .10/28/11",
	"data" => array(),
	"children" => array()
)
$expression_level	=	"66.7%"
$solubility_level	=	"66.7%"
$spur	=	array(
	"id" => "1827",
	"target_id" => "013112",
	"purification_suffix" => "1700",
	"expression_id" => "6335",
	"local_expression_id" => "8864",
	"local_protein_target_id" => "14486",
	"local_purification_id" => "1700",
	"experiment_date_start" => "2011-11-04",
	"experiment_date_end" => "2011-11-07",
	"staff_id" => "429",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Large-Scale Automated Protein Purification",
	"status" => "success",
	"description" => "",
	"affinity_tag_status" => "na",
	"semet_status" => "native",
	"covalent_modification" => null,
	"final_buffer" => "",
	"final_concentration" => "0.6514",
	"final_volume" => "7509",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2011-11-13 15:06:39.906316+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:28:45.867601+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2011-11-13",
	"dummy" => false,
	"yield" => null,
	"Staff" => array(
	"id" => "429",
	"first_name" => "Alan",
	"last_name" => "Glenn",
	"email" => "alan.glenn@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
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	"protein_production" => false,
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	"lab_contact" => false,
	"inserted" => "2012-02-11 15:00:14.66753+00",
	"updated" => "2012-02-11 15:00:14.66753+00",
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	"active" => true,
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	"real_id" => "429"
),
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	"Hsqc" => array()
)
$ipur	=	array(
	"id" => "Purification___1827",
	"name" => "P  .11/04/11"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

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