Warning (2): pg_pconnect() [function.pg-pconnect]: Unable to connect to PostgreSQL server: FATAL: remaining connection slots are reserved for non-replication superuser connections [CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 122]Code | Context$this->connection = pg_connect($conn, PGSQL_CONNECT_FORCE_NEW);
} else {
$this->connection = pg_pconnect($conn);
$config = array( "persistent" => true, "host" => "*****", "login" => "*****", "password" => "*****", "database" => "*****", "schema" => "*****", "port" => "*****", "encoding" => "utf8", "sslmode" => "prefer", "driver" => "postgres", "prefix" => "*****" ) $conn = "host='labdb' port='5432' dbname='labdb_aecom' user='lab_interface' password='l4b_interface' sslmode='prefer'"pg_pconnect - [internal], line ?? DboPostgres::connect() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 122 DboSource::__construct() - CORE/cake/libs/model/datasources/dbo_source.php, line 144 ConnectionManager::getDataSource() - CORE/cake/libs/model/connection_manager.php, line 114 Model::setDataSource() - CORE/cake/libs/model/model.php, line 2863 Model::__construct() - CORE/cake/libs/model/model.php, line 478 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142
Warning (2): pg_set_client_encoding() expects parameter 1 to be resource, boolean given [CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 987]Code | Context*/
function setEncoding($enc) {
return pg_set_client_encoding($this->connection, $enc) == 0;
$enc = "utf8"pg_set_client_encoding - [internal], line ?? DboPostgres::setEncoding() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 987 DboPostgres::connect() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 131 DboSource::__construct() - CORE/cake/libs/model/datasources/dbo_source.php, line 144 ConnectionManager::getDataSource() - CORE/cake/libs/model/connection_manager.php, line 114 Model::setDataSource() - CORE/cake/libs/model/model.php, line 2863 Model::__construct() - CORE/cake/libs/model/model.php, line 478 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69
Warning (2): pg_query() expects parameter 1 to be resource, boolean given [CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 169]Code | Context*/
function _execute($sql) {
return pg_query($this->connection, $sql);
$sql = "SELECT table_name as name FROM INFORMATION_SCHEMA.tables WHERE table_schema = 'hkldb' OR table_schema = 'pepdb' OR table_schema = 'xtaldb' OR table_schema = 'public';"pg_query - [internal], line ?? DboPostgres::_execute() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 169 DboSource::execute() - CORE/cake/libs/model/datasources/dbo_source.php, line 254 DboSource::fetchAll() - CORE/cake/libs/model/datasources/dbo_source.php, line 411 DboPostgres::listSources() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 187 Model::setSource() - CORE/cake/libs/model/model.php, line 777 Model::__construct() - CORE/cake/libs/model/model.php, line 483 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69
Warning (2): pg_last_error() expects parameter 1 to be resource, boolean given [CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 462]Code*/
function lastError() {
$error = pg_last_error($this->connection);
pg_last_error - [internal], line ?? DboPostgres::lastError() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 462 DboSource::execute() - CORE/cake/libs/model/datasources/dbo_source.php, line 258 DboSource::fetchAll() - CORE/cake/libs/model/datasources/dbo_source.php, line 411 DboPostgres::listSources() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 187 Model::setSource() - CORE/cake/libs/model/model.php, line 777 Model::__construct() - CORE/cake/libs/model/model.php, line 483 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69
Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/cakephp-1.3-git/cake/libs/debugger.php:686) [CORE/cake/libs/controller/controller.php, line 742]Code | Context*/
function header($status) {
header($status);
$status = "HTTP/1.0 500 Internal Server Error"header - [internal], line ?? Controller::header() - CORE/cake/libs/controller/controller.php, line 742 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 254 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112 ErrorHandler::__construct() - CORE/cake/libs/error.php, line 125 Object::cakeError() - CORE/cake/libs/object.php, line 201 Model::setSource() - CORE/cake/libs/model/model.php, line 783 Model::__construct() - CORE/cake/libs/model/model.php, line 483 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491
![]() |
Notice (8): Undefined index: view_contact_only [/var/www/unitrack/views/helpers/unitrack_actions.php, line 236]Code | Context<div class="leftnav">
<?php $actions->create(isset($this->params['pass'][0])?$this->params['pass'][0]:null);?>
$id = "016735" $addIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_01.png?1287178386" alt="" />" $listIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_61.png?1287178386" alt="" />" $deleteIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_02.png?1287178386" alt="" />" $editIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_45.png?1287178386" alt="" />" $loginIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_59.png?1287178386" alt="" />" $logoutIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_51.png?1287178386" alt="" />" $cancelIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_05.png?1287178386" alt="" />" $okIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_06.png?1287178386" alt="" />" $settingsIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_41.png?1287178386" alt="" />" $bugIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_50.png?1287178386" alt="" />" $menuIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_20.png?1287178386" alt="" />" $lockIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_42.png?1287178386" alt="" />" $warningIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_11.png?1287178386" alt="" />" $internalIcon = "<img src="/nysgrc/img/Fwdw_icons/standart/png/24x24/001_37.png?1287178386" alt="" />" $treen = array( "Target" => "Protein Clone", "Protein Clone" => "Expression", "ProteinClone" => "Expression", "Expression" => "Purification", "Purification" => "Crystallization Drop", "Crystallization Drop" => "Crystal Harvest", "CrystallizationDrop" => "Crystal Harvest", "Crystal Harvest" => "Dataset", "CrystalHarvest" => "Dataset" ) $tree = array( "Target" => "protein_clones", "Protein Clone" => "expressions", "ProteinClone" => "expressions", "Expression" => "purifications", "Purification" => "crystallization_drops", "Crystallization Drop" => "crystal_harvests", "CrystallizationDrop" => "crystal_harvests", "Crystal Harvest" => "datasets", "CrystalHarvest" => "datasets" ) $view = View View::$base = "/nysgrc" View::$here = "/nysgrc/space_tree/view/016735" View::$plugin = NULL View::$name = "CakeError" View::$action = NULL View::$params = array View::$passedArgs = array View::$data = array View::$helpers = array View::$viewPath = "errors" View::$viewVars = array View::$layout = "default" View::$layoutPath = NULL View::$autoRender = true View::$autoLayout = true View::$ext = ".ctp" View::$subDir = NULL View::$theme = NULL View::$cacheAction = false View::$validationErrors = array View::$hasRendered = false View::$loaded = array View::$modelScope = false View::$model = NULL View::$association = NULL View::$field = NULL View::$fieldSuffix = NULL View::$modelId = NULL View::$uuids = array View::$output = false View::$__passedVars = array View::$__scripts = array View::$__paths = array View::$webroot = "/nysgrc/" View::$Form = FormHelper object View::$Javascript = JavascriptHelper object View::$Ajax = AjaxHelper object View::$Session = SessionHelper object View::$Html = HtmlHelper object View::$Actions = ActionsHelper object $RequestPerson = RequestPerson RequestPerson::$name = "RequestPerson" RequestPerson::$useTable = "request_person" RequestPerson::$primaryKey = "person_id" RequestPerson::$hasMany = array RequestPerson::$validate = array RequestPerson::$actsAs = array RequestPerson::$useDbConfig = "default" RequestPerson::$displayField = "person_id" RequestPerson::$id = false RequestPerson::$data = array RequestPerson::$table = "request_person" RequestPerson::$_schema = array RequestPerson::$validationErrors = array RequestPerson::$tablePrefix = "" RequestPerson::$alias = "RequestPerson" RequestPerson::$tableToModel = array RequestPerson::$logTransactions = false RequestPerson::$cacheQueries = false RequestPerson::$belongsTo = array RequestPerson::$hasOne = array RequestPerson::$hasAndBelongsToMany = array RequestPerson::$Behaviors = BehaviorCollection object RequestPerson::$whitelist = array RequestPerson::$cacheSources = true RequestPerson::$findQueryType = NULL RequestPerson::$recursive = 1 RequestPerson::$order = NULL RequestPerson::$virtualFields = array RequestPerson::$__associationKeys = array RequestPerson::$__associations = array RequestPerson::$__backAssociation = array RequestPerson::$__insertID = NULL RequestPerson::$__numRows = NULL RequestPerson::$__affectedRows = NULL RequestPerson::$__safeUpdateMode = false RequestPerson::$_findMethods = array RequestPerson::$RequestTarget = RequestTarget object RequestPerson::$queriesLogMax = 700 $user = false $is_requester = false $center_id = "NYSGRC" $classname = "actions_menu"Unitrack_ActionsHelper::create() - /var/www/unitrack/views/helpers/unitrack_actions.php, line 236 include - APP/views/layouts/default.ctp, line 81 View::_render() - CORE/cake/libs/view/view.php, line 736 View::renderLayout() - CORE/cake/libs/view/view.php, line 494 View::render() - CORE/cake/libs/view/view.php, line 440 Controller::render() - CORE/cake/libs/controller/controller.php, line 909 ErrorHandler::_outputMessage() - CORE/cake/libs/error.php, line 458 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 261 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112 ErrorHandler::__construct() - CORE/cake/libs/error.php, line 125 Object::cakeError() - CORE/cake/libs/object.php, line 201 Model::setSource() - CORE/cake/libs/model/model.php, line 783 Model::__construct() - CORE/cake/libs/model/model.php, line 483 Unitrack_AppModel::__construct() - /var/www/unitrack/unitrack_app_model.php, line 69 ClassRegistry::init() - CORE/cake/libs/class_registry.php, line 142 Model::__constructLinkedModel() - CORE/cake/libs/model/model.php, line 667 Model::__createLinks() - CORE/cake/libs/model/model.php, line 638 Model::__construct() - CORE/cake/libs/model/model.php, line 491
Notice (8): Trying to get property of non-object [CORE/cake/libs/model/datasources/dbo_source.php, line 812]Code | Contextreturn false;
}
$results = $db->read($this, $query);
$model = Target Target::$validate = array Target::$name = "Target" Target::$useTable = "protein_target" Target::$primaryKey = "target_id" Target::$belongsTo = array Target::$hasMany = array Target::$hasOne = array Target::$hasAndBelongsToMany = array Target::$actsAs = array Target::$useDbConfig = "default" Target::$displayField = "target_id" Target::$id = false Target::$data = array Target::$table = "protein_target" Target::$_schema = array Target::$validationErrors = array Target::$tablePrefix = "" Target::$alias = "Target" Target::$tableToModel = array Target::$logTransactions = false Target::$cacheQueries = false Target::$Behaviors = BehaviorCollection object Target::$whitelist = array Target::$cacheSources = true Target::$findQueryType = "first" Target::$recursive = 1 Target::$order = NULL Target::$virtualFields = array Target::$__associationKeys = array Target::$__associations = array Target::$__backAssociation = array Target::$__insertID = NULL Target::$__numRows = NULL Target::$__affectedRows = NULL Target::$__safeUpdateMode = false Target::$_findMethods = array Target::$Project = Project object Target::$Organism = TaxonomyName object Target::$Species = TaxonomyName object Target::$Stage = Stage object Target::$ProteinPdbHomolog = ProteinPdbHomolog object Target::$RequestTarget = RequestTarget object Target::$TargetPlanning = TargetPlanning object Target::$SubTarget = Subtarget object Target::$ProteinClone = NULL $queryData = array( "conditions" => array( "Target.target_id" => "016735" ), "fields" => array( ""Target"."id" AS "Target__id"", ""Target"."target_id" AS "Target__target_id"", ""Target"."local_target_id" AS "Target__local_target_id"", ""Target"."locus_tag" AS "Target__locus_tag"", ""Target"."ncbi_gi" AS "Target__ncbi_gi"", ""Target"."ncbi_accession" AS "Target__ncbi_accession"", ""Target"."ncbi_geneid" AS "Target__ncbi_geneid"", ""Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id"", ""Target"."gene_name" AS "Target__gene_name"", ""Target"."common_name" AS "Target__common_name"", ""Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region"", ""Target"."ncbi_note" AS "Target__ncbi_note"", ""Target"."tigr_main_role_id" AS "Target__tigr_main_role_id"", ""Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id"", ""Target"."comment" AS "Target__comment"", ""Target"."justification" AS "Target__justification"", ""Target"."sequence" AS "Target__sequence"", ""Target"."sequence_length" AS "Target__sequence_length"", ""Target"."dna_sequence" AS "Target__dna_sequence"", ""Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi"", ""Target"."priority" AS "Target__priority"", ""Target"."project" AS "Target__project"", ""Target"."selection_phase" AS "Target__selection_phase"", ""Target"."date_selected" AS "Target__date_selected"", ""Target"."date_approved" AS "Target__date_approved"", ""Target"."completion_code" AS "Target__completion_code"", ""Target"."pi" AS "Target__pi"", ""Target"."tms" AS "Target__tms"", ""Target"."sp" AS "Target__sp"", ""Target"."core_genome" AS "Target__core_genome"", ""Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog"", ""Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog"", ""Target"."protease_motifs" AS "Target__protease_motifs"", ""Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism"", ""Target"."study_id" AS "Target__study_id"", ""Target"."drug_target_homologs" AS "Target__drug_target_homologs"", ""Target"."virulence_genes" AS "Target__virulence_genes"", ""Target"."essential_genes_homologs" AS "Target__essential_genes_homologs"", ""Target"."dna_binding_motifs" AS "Target__dna_binding_motifs"", ""Target"."inserted" AS "Target__inserted"", ""Target"."updated" AS "Target__updated"", ""Target"."species_taxon_id" AS "Target__species_taxon_id"", ""Target"."ins_user_id" AS "Target__ins_user_id"", ""Target"."upd_user_id" AS "Target__upd_user_id"", ""Target"."stage" AS "Target__stage"", ""Target"."hidden" AS "Target__hidden"", ""Target"."submitter_id" AS "Target__submitter_id"", ""Target"."selection_db_id" AS "Target__selection_db_id"", ""Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id"", ""Target"."batch" AS "Target__batch"", ""Target"."genus_taxon_id" AS "Target__genus_taxon_id"", ""Target"."seguid" AS "Target__seguid"", ""Target"."uniprot_id" AS "Target__uniprot_id"", ""Target"."ec" AS "Target__ec"", ""Target"."target_family" AS "Target__target_family"", ""Target"."tar_designpool_id" AS "Target__tar_designpool_id"", ""Target"."community_nominated" AS "Target__community_nominated"", ""Target"."partnership_nominated" AS "Target__partnership_nominated"", ""Target"."biomedical" AS "Target__biomedical"", ""Target"."metagenomic" AS "Target__metagenomic"", ""Target"."structural_coverage" AS "Target__structural_coverage"", ""Target"."psi2" AS "Target__psi2"", ""Target"."legacy" AS "Target__legacy"", ""Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner"", ""Target"."functional_mutant" AS "Target__functional_mutant"", ""Target"."conformational_state" AS "Target__conformational_state"", ""Target"."disease" AS "Target__disease"", ""Target"."individual_organism" AS "Target__individual_organism"", ""Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance"", ""Target"."general_domain_family" AS "Target__general_domain_family"", ""Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family"", ""Target"."first_structure_of_class" AS "Target__first_structure_of_class"", ""Target"."functional_follow_up" AS "Target__functional_follow_up"", ""Target"."technology_development" AS "Target__technology_development"", ""Target"."membrane_protein" AS "Target__membrane_protein"", ""Target"."translated_dna_sequence" AS "Target__translated_dna_sequence"", ""Target"."family_coverage" AS "Target__family_coverage"", ""Target"."family_coverage_date" AS "Target__family_coverage_date"", ""Target"."distribution_lab" AS "Target__distribution_lab"", ""Target"."uniprot_accession" AS "Target__uniprot_accession"", ""Target"."protocol_id" AS "Target__protocol_id"", ""Target"."ensembl_protein_id" AS "Target__ensembl_protein_id"", ""Target"."ensembl_gene_id" AS "Target__ensembl_gene_id"", ""Target"."type" AS "Target__type"", ""Target"."ligand_studies" AS "Target__ligand_studies"", ""Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships"", ""Target"."single_domain_protein" AS "Target__single_domain_protein"", ""Target"."multidomain_protein" AS "Target__multidomain_protein"", ""Target"."oligomeric_protein" AS "Target__oligomeric_protein"", ""Target"."eukaryotic_protein" AS "Target__eukaryotic_protein"", ""Target"."protein_protein_complex" AS "Target__protein_protein_complex"", ""Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex"", ""Target"."protein_ligand_complex" AS "Target__protein_ligand_complex"", ""Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein"", ""Target"."post_translational_modification" AS "Target__post_translational_modification"", ""Target"."target_id" AS "Target__target_id"", ""Project"."protein_target_id" AS "Project__protein_target_id"", ""Project"."pdb_id" AS "Project__pdb_id"", ""Project"."chain_id" AS "Project__chain_id"", ""Project"."sequence_identity" AS "Project__sequence_identity"", ""Project"."organism" AS "Project__organism"", ""Target"."target_id" AS "Target__target_id"", ""Organism"."tax_id" AS "Organism__tax_id"", ""Organism"."name_text" AS "Organism__name_text"", ""Organism"."unique_name" AS "Organism__unique_name"", ""Organism"."name_class" AS "Organism__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Species"."tax_id" AS "Species__tax_id"", ""Species"."name_text" AS "Species__name_text"", ""Species"."unique_name" AS "Species__unique_name"", ""Species"."name_class" AS "Species__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Stage"."sequence" AS "Stage__sequence"", ""Stage"."name" AS "Stage__name"", ""Target"."target_id" AS "Target__target_id"", ""ProteinPdbHomolog"."protein_target_id" AS "ProteinPdbHomolog__protein_target_id"", ""ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id"", ""ProteinPdbHomolog"."chain_id" AS "ProteinPdbHomolog__chain_id"", ""ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity"", ""ProteinPdbHomolog"."organism" AS "ProteinPdbHomolog__organism"", ""Target"."target_id" AS "Target__target_id"", ""RequestTarget"."id" AS "RequestTarget__id"", ""RequestTarget"."gi" AS "RequestTarget__gi"", ""RequestTarget"."ncbi_accver" AS "RequestTarget__ncbi_accver"", ""RequestTarget"."sequence" AS "RequestTarget__sequence"", ""RequestTarget"."ncbi_taxon_id" AS "RequestTarget__ncbi_taxon_id"", ""RequestTarget"."organism" AS "RequestTarget__organism"", ""RequestTarget"."comment" AS "RequestTarget__comment"", ""RequestTarget"."person_id" AS "RequestTarget__person_id"", ""RequestTarget"."justification" AS "RequestTarget__justification"", ""RequestTarget"."resources" AS "RequestTarget__resources"", ""RequestTarget"."agreement_clicked" AS "RequestTarget__agreement_clicked"", ""RequestTarget"."approved" AS "RequestTarget__approved"", ""RequestTarget"."target_id" AS "RequestTarget__target_id"", ""RequestTarget"."inserted" AS "RequestTarget__inserted"", ""RequestTarget"."updated" AS "RequestTarget__updated"", ""RequestTarget"."dna_sequence" AS "RequestTarget__dna_sequence"", ""RequestTarget"."dna_source" AS "RequestTarget__dna_source"", ""RequestTarget"."dna_source_taxon_id" AS "RequestTarget__dna_source_taxon_id"", ""RequestTarget"."center" AS "RequestTarget__center"", ""RequestTarget"."community_interest" AS "RequestTarget__community_interest"", ""Target"."target_id" AS "Target__target_id"", ""TargetPlanning"."id" AS "TargetPlanning__id"", ""TargetPlanning"."target_id" AS "TargetPlanning__target_id"", ""TargetPlanning"."source_file" AS "TargetPlanning__source_file"", ""TargetPlanning"."target_type" AS "TargetPlanning__target_type"", ""TargetPlanning"."genomic_dna_source" AS "TargetPlanning__genomic_dna_source"", ""TargetPlanning"."genomic_dna_status" AS "TargetPlanning__genomic_dna_status"", ""TargetPlanning"."notes1" AS "TargetPlanning__notes1"", ""TargetPlanning"."id1" AS "TargetPlanning__id1"", ""TargetPlanning"."notes2" AS "TargetPlanning__notes2"", ""TargetPlanning"."id2" AS "TargetPlanning__id2"", ""TargetPlanning"."ortholog_rescue" AS "TargetPlanning__ortholog_rescue"", ""TargetPlanning"."codon_optimization" AS "TargetPlanning__codon_optimization"", ""TargetPlanning"."should_solve_structure" AS "TargetPlanning__should_solve_structure"", ""TargetPlanning"."inserted" AS "TargetPlanning__inserted"", ""TargetPlanning"."updated" AS "TargetPlanning__updated"", ""TargetPlanning"."operon_colocalization" AS "TargetPlanning__operon_colocalization"", ""Target"."target_id" AS "Target__target_id"" ), "joins" => array( array(), array(), array(), array(), array(), array(), array() ), "limit" => 1, "offset" => array(), "order" => array( array() ), "page" => 1, "group" => array(), "callbacks" => true, "recursive" => null ) $recursive = null $null = null $array = array( "callbacks" => true ) $linkedModels = array( "belongsTo/Project" => true, "belongsTo/Organism" => true, "belongsTo/Species" => true, "belongsTo/Stage" => true, "hasOne/ProteinPdbHomolog" => true, "hasOne/RequestTarget" => true, "hasOne/TargetPlanning" => true ) $_associations = array( "belongsTo", "hasOne", "hasMany", "hasAndBelongsToMany" ) $type = "hasMany" $assoc = "ProteinClone" $assocData = array( "className" => "ProteinClone", "foreignKey" => "target_id" ) $linkModel = null $external = false $this = DboPostgres DboPostgres::$description = "PostgreSQL DBO Driver" DboPostgres::$_commands = array DboPostgres::$_baseConfig = array DboPostgres::$columns = array DboPostgres::$startQuote = """ DboPostgres::$endQuote = """ DboPostgres::$_sequenceMap = array DboPostgres::$column_query = "(SELECT current_database()::information_schema.sql_identifier AS table_catalog, nc.nspname::information_schema.sql_identifier AS table_schema, c.relname::information_schema.sql_identifier AS table_name, a.attname::information_schema.sql_identifier AS column_name, a.attnum::information_schema.cardinal_number AS ordinal_position, pg_get_expr(ad.adbin, ad.adrelid)::information_schema.character_data AS column_default, CASE WHEN a.attnotnull OR t.typtype = 'd'::"char" AND t.typnotnull THEN 'NO'::text ELSE 'YES'::text END::information_schema.yes_or_no AS is_nullable, CASE WHEN t.typtype = 'd'::"char" THEN CASE WHEN bt.typelem <> 0::oid AND bt.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nbt.nspname = 'pg_catalog'::name THEN format_type(t.typbasetype, NULL::integer) ELSE 'USER-DEFINED'::text END ELSE CASE WHEN t.typelem <> 0::oid AND t.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nt.nspname = 'pg_catalog'::name THEN format_type(a.atttypid, NULL::integer) ELSE 'USER-DEFINED'::text END END::information_schema.character_data AS data_type, information_schema._pg_char_max_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_maximum_length, information_schema._pg_char_octet_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_octet_length, information_schema._pg_numeric_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision, information_schema._pg_numeric_precision_radix(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision_radix, information_schema._pg_numeric_scale(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_scale, information_schema._pg_datetime_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS datetime_precision, information_schema._pg_interval_type(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.character_data AS interval_type, NULL::integer::information_schema.cardinal_number AS interval_precision, NULL::character varying::information_schema.sql_identifier AS character_set_catalog, NULL::character varying::information_schema.sql_identifier AS character_set_schema, NULL::character varying::information_schema.sql_identifier AS character_set_name, CASE WHEN nco.nspname IS NOT NULL THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS collation_catalog, nco.nspname::information_schema.sql_identifier AS collation_schema, co.collname::information_schema.sql_identifier AS collation_name, CASE WHEN t.typtype = 'd'::"char" THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS domain_catalog, CASE WHEN t.typtype = 'd'::"char" THEN nt.nspname ELSE NULL::name END::information_schema.sql_identifier AS domain_schema, CASE WHEN t.typtype = 'd'::"char" THEN t.typname ELSE NULL::name END::information_schema.sql_identifier AS domain_name, current_database()::information_schema.sql_identifier AS udt_catalog, COALESCE(nbt.nspname, nt.nspname)::information_schema.sql_identifier AS udt_schema, COALESCE(bt.typname, t.typname)::information_schema.sql_identifier AS udt_name, NULL::character varying::information_schema.sql_identifier AS scope_catalog, NULL::character varying::information_schema.sql_identifier AS scope_schema, NULL::character varying::information_schema.sql_identifier AS scope_name, NULL::integer::information_schema.cardinal_number AS maximum_cardinality, a.attnum::information_schema.sql_identifier AS dtd_identifier, 'NO'::character varying::information_schema.yes_or_no AS is_self_referencing, CASE WHEN a.attidentity = ANY (ARRAY['a'::"char", 'd'::"char"]) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_identity, CASE a.attidentity WHEN 'a'::"char" THEN 'ALWAYS'::text WHEN 'd'::"char" THEN 'BY DEFAULT'::text ELSE NULL::text END::information_schema.character_data AS identity_generation, seq.seqstart::information_schema.character_data AS identity_start, seq.seqincrement::information_schema.character_data AS identity_increment, seq.seqmax::information_schema.character_data AS identity_maximum, seq.seqmin::information_schema.character_data AS identity_minimum, CASE WHEN seq.seqcycle THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS identity_cycle, 'NEVER'::character varying::information_schema.character_data AS is_generated, NULL::character varying::information_schema.character_data AS generation_expression, CASE WHEN (c.relkind = ANY (ARRAY['r'::"char", 'p'::"char"])) OR (c.relkind = ANY (ARRAY['v'::"char", 'm'::"char", 'f'::"char"])) AND pg_column_is_updatable(c.oid::regclass, a.attnum, false) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_updatable FROM pg_attribute a LEFT JOIN pg_attrdef ad ON a.attrelid = ad.adrelid AND a.attnum = ad.adnum JOIN (pg_class c JOIN pg_namespace nc ON c.relnamespace = nc.oid) ON a.attrelid = c.oid JOIN (pg_type t JOIN pg_namespace nt ON t.typnamespace = nt.oid) ON a.atttypid = t.oid LEFT JOIN (pg_type bt JOIN pg_namespace nbt ON bt.typnamespace = nbt.oid) ON t.typtype = 'd'::"char" AND t.typbasetype = bt.oid LEFT JOIN (pg_collation co JOIN pg_namespace nco ON co.collnamespace = nco.oid) ON a.attcollation = co.oid AND (nco.nspname <> 'pg_catalog'::name OR co.collname <> 'default'::name) LEFT JOIN (pg_depend dep JOIN pg_sequence seq ON dep.classid = 'pg_class'::regclass::oid AND dep.objid = seq.seqrelid AND dep.deptype = 'i'::"char") ON dep.refclassid = 'pg_class'::regclass::oid AND dep.refobjid = c.oid AND dep.refobjsubid = a.attnum WHERE NOT pg_is_other_temp_schema(nc.oid) AND a.attnum > 0 AND NOT a.attisdropped AND (c.relkind = ANY (ARRAY['r'::"char", 'v'::"char", 'm'::"char", 'f'::"char", 'p'::"char"])) AND (pg_has_role(c.relowner, 'USAGE'::text) OR has_column_privilege(c.oid, a.attnum, 'SELECT, INSERT, UPDATE, REFERENCES'::text))) as is_columns" DboPostgres::$index = array DboPostgres::$alias = "AS " DboPostgres::$methodCache = array DboPostgres::$cacheMethods = true DboPostgres::$__bypass = false DboPostgres::$__sqlOps = array DboPostgres::$virtualFieldSeparator = "__" DboPostgres::$tableParameters = array DboPostgres::$fieldParameters = array DboPostgres::$connected = true DboPostgres::$fullDebug = true DboPostgres::$error = NULL DboPostgres::$affected = 0 DboPostgres::$numRows = 0 DboPostgres::$took = 0 DboPostgres::$_result = resource DboPostgres::$_queriesCnt = 30 DboPostgres::$_queriesTime = 38 DboPostgres::$_queriesLog = array DboPostgres::$_queriesLogMax = 700 DboPostgres::$_queryCache = array DboPostgres::$__descriptions = array DboPostgres::$_sources = array DboPostgres::$connection = resource DboPostgres::$config = array DboPostgres::$configKeyName = "default" DboPostgres::$_transactionStarted = false DboPostgres::$cacheSources = true DboPostgres::$results = resource DboPostgres::$map = array DboPostgres::$__booleans = arrayDboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 812 Model::find() - CORE/cake/libs/model/model.php, line 2153 DboSource::query() - CORE/cake/libs/model/datasources/dbo_source.php, line 350 Model::call__() - CORE/cake/libs/model/model.php, line 511 Overloadable::__call() - CORE/cake/libs/overloadable_php5.php, line 50 Target::findByTargetId() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_Target::findById() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_ActionsHelper::create() - /var/www/unitrack/views/helpers/unitrack_actions.php, line 309 include - APP/views/layouts/default.ctp, line 81 View::_render() - CORE/cake/libs/view/view.php, line 736 View::renderLayout() - CORE/cake/libs/view/view.php, line 494 View::render() - CORE/cake/libs/view/view.php, line 440 Controller::render() - CORE/cake/libs/controller/controller.php, line 909 ErrorHandler::_outputMessage() - CORE/cake/libs/error.php, line 458 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 261 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112 ErrorHandler::__construct() - CORE/cake/libs/error.php, line 125 Object::cakeError() - CORE/cake/libs/object.php, line 201
Notice (8): Trying to get property of non-object [CORE/cake/libs/model/datasources/dbo_source.php, line 841]Code | Contextreturn false;
}
$results = $db->read($this, $query);
$model = Target Target::$validate = array Target::$name = "Target" Target::$useTable = "protein_target" Target::$primaryKey = "target_id" Target::$belongsTo = array Target::$hasMany = array Target::$hasOne = array Target::$hasAndBelongsToMany = array Target::$actsAs = array Target::$useDbConfig = "default" Target::$displayField = "target_id" Target::$id = false Target::$data = array Target::$table = "protein_target" Target::$_schema = array Target::$validationErrors = array Target::$tablePrefix = "" Target::$alias = "Target" Target::$tableToModel = array Target::$logTransactions = false Target::$cacheQueries = false Target::$Behaviors = BehaviorCollection object Target::$whitelist = array Target::$cacheSources = true Target::$findQueryType = "first" Target::$recursive = 1 Target::$order = NULL Target::$virtualFields = array Target::$__associationKeys = array Target::$__associations = array Target::$__backAssociation = array Target::$__insertID = NULL Target::$__numRows = NULL Target::$__affectedRows = NULL Target::$__safeUpdateMode = false Target::$_findMethods = array Target::$Project = Project object Target::$Organism = TaxonomyName object Target::$Species = TaxonomyName object Target::$Stage = Stage object Target::$ProteinPdbHomolog = ProteinPdbHomolog object Target::$RequestTarget = RequestTarget object Target::$TargetPlanning = TargetPlanning object Target::$SubTarget = Subtarget object Target::$ProteinClone = NULL Target::$Purification = NULL Target::$Expression = NULL Target::$Deposit = NULL Target::$Dataset = NULL Target::$CrystalHarvest = NULL Target::$Justification = NULL $queryData = array( "conditions" => array( "Target.target_id" => "016735" ), "fields" => array( ""Target"."id" AS "Target__id"", ""Target"."target_id" AS "Target__target_id"", ""Target"."local_target_id" AS "Target__local_target_id"", ""Target"."locus_tag" AS "Target__locus_tag"", ""Target"."ncbi_gi" AS "Target__ncbi_gi"", ""Target"."ncbi_accession" AS "Target__ncbi_accession"", ""Target"."ncbi_geneid" AS "Target__ncbi_geneid"", ""Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id"", ""Target"."gene_name" AS "Target__gene_name"", ""Target"."common_name" AS "Target__common_name"", ""Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region"", ""Target"."ncbi_note" AS "Target__ncbi_note"", ""Target"."tigr_main_role_id" AS "Target__tigr_main_role_id"", ""Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id"", ""Target"."comment" AS "Target__comment"", ""Target"."justification" AS "Target__justification"", ""Target"."sequence" AS "Target__sequence"", ""Target"."sequence_length" AS "Target__sequence_length"", ""Target"."dna_sequence" AS "Target__dna_sequence"", ""Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi"", ""Target"."priority" AS "Target__priority"", ""Target"."project" AS "Target__project"", ""Target"."selection_phase" AS "Target__selection_phase"", ""Target"."date_selected" AS "Target__date_selected"", ""Target"."date_approved" AS "Target__date_approved"", ""Target"."completion_code" AS "Target__completion_code"", ""Target"."pi" AS "Target__pi"", ""Target"."tms" AS "Target__tms"", ""Target"."sp" AS "Target__sp"", ""Target"."core_genome" AS "Target__core_genome"", ""Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog"", ""Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog"", ""Target"."protease_motifs" AS "Target__protease_motifs"", ""Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism"", ""Target"."study_id" AS "Target__study_id"", ""Target"."drug_target_homologs" AS "Target__drug_target_homologs"", ""Target"."virulence_genes" AS "Target__virulence_genes"", ""Target"."essential_genes_homologs" AS "Target__essential_genes_homologs"", ""Target"."dna_binding_motifs" AS "Target__dna_binding_motifs"", ""Target"."inserted" AS "Target__inserted"", ""Target"."updated" AS "Target__updated"", ""Target"."species_taxon_id" AS "Target__species_taxon_id"", ""Target"."ins_user_id" AS "Target__ins_user_id"", ""Target"."upd_user_id" AS "Target__upd_user_id"", ""Target"."stage" AS "Target__stage"", ""Target"."hidden" AS "Target__hidden"", ""Target"."submitter_id" AS "Target__submitter_id"", ""Target"."selection_db_id" AS "Target__selection_db_id"", ""Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id"", ""Target"."batch" AS "Target__batch"", ""Target"."genus_taxon_id" AS "Target__genus_taxon_id"", ""Target"."seguid" AS "Target__seguid"", ""Target"."uniprot_id" AS "Target__uniprot_id"", ""Target"."ec" AS "Target__ec"", ""Target"."target_family" AS "Target__target_family"", ""Target"."tar_designpool_id" AS "Target__tar_designpool_id"", ""Target"."community_nominated" AS "Target__community_nominated"", ""Target"."partnership_nominated" AS "Target__partnership_nominated"", ""Target"."biomedical" AS "Target__biomedical"", ""Target"."metagenomic" AS "Target__metagenomic"", ""Target"."structural_coverage" AS "Target__structural_coverage"", ""Target"."psi2" AS "Target__psi2"", ""Target"."legacy" AS "Target__legacy"", ""Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner"", ""Target"."functional_mutant" AS "Target__functional_mutant"", ""Target"."conformational_state" AS "Target__conformational_state"", ""Target"."disease" AS "Target__disease"", ""Target"."individual_organism" AS "Target__individual_organism"", ""Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance"", ""Target"."general_domain_family" AS "Target__general_domain_family"", ""Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family"", ""Target"."first_structure_of_class" AS "Target__first_structure_of_class"", ""Target"."functional_follow_up" AS "Target__functional_follow_up"", ""Target"."technology_development" AS "Target__technology_development"", ""Target"."membrane_protein" AS "Target__membrane_protein"", ""Target"."translated_dna_sequence" AS "Target__translated_dna_sequence"", ""Target"."family_coverage" AS "Target__family_coverage"", ""Target"."family_coverage_date" AS "Target__family_coverage_date"", ""Target"."distribution_lab" AS "Target__distribution_lab"", ""Target"."uniprot_accession" AS "Target__uniprot_accession"", ""Target"."protocol_id" AS "Target__protocol_id"", ""Target"."ensembl_protein_id" AS "Target__ensembl_protein_id"", ""Target"."ensembl_gene_id" AS "Target__ensembl_gene_id"", ""Target"."type" AS "Target__type"", ""Target"."ligand_studies" AS "Target__ligand_studies"", ""Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships"", ""Target"."single_domain_protein" AS "Target__single_domain_protein"", ""Target"."multidomain_protein" AS "Target__multidomain_protein"", ""Target"."oligomeric_protein" AS "Target__oligomeric_protein"", ""Target"."eukaryotic_protein" AS "Target__eukaryotic_protein"", ""Target"."protein_protein_complex" AS "Target__protein_protein_complex"", ""Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex"", ""Target"."protein_ligand_complex" AS "Target__protein_ligand_complex"", ""Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein"", ""Target"."post_translational_modification" AS "Target__post_translational_modification"", ""Target"."target_id" AS "Target__target_id"", ""Project"."protein_target_id" AS "Project__protein_target_id"", ""Project"."pdb_id" AS "Project__pdb_id"", ""Project"."chain_id" AS "Project__chain_id"", ""Project"."sequence_identity" AS "Project__sequence_identity"", ""Project"."organism" AS "Project__organism"", ""Target"."target_id" AS "Target__target_id"", ""Organism"."tax_id" AS "Organism__tax_id"", ""Organism"."name_text" AS "Organism__name_text"", ""Organism"."unique_name" AS "Organism__unique_name"", ""Organism"."name_class" AS "Organism__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Species"."tax_id" AS "Species__tax_id"", ""Species"."name_text" AS "Species__name_text"", ""Species"."unique_name" AS "Species__unique_name"", ""Species"."name_class" AS "Species__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Stage"."sequence" AS "Stage__sequence"", ""Stage"."name" AS "Stage__name"", ""Target"."target_id" AS "Target__target_id"", ""ProteinPdbHomolog"."protein_target_id" AS "ProteinPdbHomolog__protein_target_id"", ""ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id"", ""ProteinPdbHomolog"."chain_id" AS "ProteinPdbHomolog__chain_id"", ""ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity"", ""ProteinPdbHomolog"."organism" AS "ProteinPdbHomolog__organism"", ""Target"."target_id" AS "Target__target_id"", ""RequestTarget"."id" AS "RequestTarget__id"", ""RequestTarget"."gi" AS "RequestTarget__gi"", ""RequestTarget"."ncbi_accver" AS "RequestTarget__ncbi_accver"", ""RequestTarget"."sequence" AS "RequestTarget__sequence"", ""RequestTarget"."ncbi_taxon_id" AS "RequestTarget__ncbi_taxon_id"", ""RequestTarget"."organism" AS "RequestTarget__organism"", ""RequestTarget"."comment" AS "RequestTarget__comment"", ""RequestTarget"."person_id" AS "RequestTarget__person_id"", ""RequestTarget"."justification" AS "RequestTarget__justification"", ""RequestTarget"."resources" AS "RequestTarget__resources"", ""RequestTarget"."agreement_clicked" AS "RequestTarget__agreement_clicked"", ""RequestTarget"."approved" AS "RequestTarget__approved"", ""RequestTarget"."target_id" AS "RequestTarget__target_id"", ""RequestTarget"."inserted" AS "RequestTarget__inserted"", ""RequestTarget"."updated" AS "RequestTarget__updated"", ""RequestTarget"."dna_sequence" AS "RequestTarget__dna_sequence"", ""RequestTarget"."dna_source" AS "RequestTarget__dna_source"", ""RequestTarget"."dna_source_taxon_id" AS "RequestTarget__dna_source_taxon_id"", ""RequestTarget"."center" AS "RequestTarget__center"", ""RequestTarget"."community_interest" AS "RequestTarget__community_interest"", ""Target"."target_id" AS "Target__target_id"", ""TargetPlanning"."id" AS "TargetPlanning__id"", ""TargetPlanning"."target_id" AS "TargetPlanning__target_id"", ""TargetPlanning"."source_file" AS "TargetPlanning__source_file"", ""TargetPlanning"."target_type" AS "TargetPlanning__target_type"", ""TargetPlanning"."genomic_dna_source" AS "TargetPlanning__genomic_dna_source"", ""TargetPlanning"."genomic_dna_status" AS "TargetPlanning__genomic_dna_status"", ""TargetPlanning"."notes1" AS "TargetPlanning__notes1"", ""TargetPlanning"."id1" AS "TargetPlanning__id1"", ""TargetPlanning"."notes2" AS "TargetPlanning__notes2"", ""TargetPlanning"."id2" AS "TargetPlanning__id2"", ""TargetPlanning"."ortholog_rescue" AS "TargetPlanning__ortholog_rescue"", ""TargetPlanning"."codon_optimization" AS "TargetPlanning__codon_optimization"", ""TargetPlanning"."should_solve_structure" AS "TargetPlanning__should_solve_structure"", ""TargetPlanning"."inserted" AS "TargetPlanning__inserted"", ""TargetPlanning"."updated" AS "TargetPlanning__updated"", ""TargetPlanning"."operon_colocalization" AS "TargetPlanning__operon_colocalization"", ""Target"."target_id" AS "Target__target_id"", ""Target"."target_id" AS "Target__target_id"" ), "joins" => array( array(), array(), array(), array(), array(), array(), array() ), "limit" => 1, "offset" => array(), "order" => array( array() ), "page" => 1, "group" => array(), "callbacks" => true, "recursive" => null ) $recursive = null $null = null $array = array( "callbacks" => true, "conditions" => array(), "fields" => array( ""Target"."id" AS "Target__id"", ""Target"."target_id" AS "Target__target_id"", ""Target"."local_target_id" AS "Target__local_target_id"", ""Target"."locus_tag" AS "Target__locus_tag"", ""Target"."ncbi_gi" AS "Target__ncbi_gi"", ""Target"."ncbi_accession" AS "Target__ncbi_accession"", ""Target"."ncbi_geneid" AS "Target__ncbi_geneid"", ""Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id"", ""Target"."gene_name" AS "Target__gene_name"", ""Target"."common_name" AS "Target__common_name"", ""Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region"", ""Target"."ncbi_note" AS "Target__ncbi_note"", ""Target"."tigr_main_role_id" AS "Target__tigr_main_role_id"", ""Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id"", ""Target"."comment" AS "Target__comment"", ""Target"."justification" AS "Target__justification"", ""Target"."sequence" AS "Target__sequence"", ""Target"."sequence_length" AS "Target__sequence_length"", ""Target"."dna_sequence" AS "Target__dna_sequence"", ""Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi"", ""Target"."priority" AS "Target__priority"", ""Target"."project" AS "Target__project"", ""Target"."selection_phase" AS "Target__selection_phase"", ""Target"."date_selected" AS "Target__date_selected"", ""Target"."date_approved" AS "Target__date_approved"", ""Target"."completion_code" AS "Target__completion_code"", ""Target"."pi" AS "Target__pi"", ""Target"."tms" AS "Target__tms"", ""Target"."sp" AS "Target__sp"", ""Target"."core_genome" AS "Target__core_genome"", ""Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog"", ""Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog"", ""Target"."protease_motifs" AS "Target__protease_motifs"", ""Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism"", ""Target"."study_id" AS "Target__study_id"", ""Target"."drug_target_homologs" AS "Target__drug_target_homologs"", ""Target"."virulence_genes" AS "Target__virulence_genes"", ""Target"."essential_genes_homologs" AS "Target__essential_genes_homologs"", ""Target"."dna_binding_motifs" AS "Target__dna_binding_motifs"", ""Target"."inserted" AS "Target__inserted"", ""Target"."updated" AS "Target__updated"", ""Target"."species_taxon_id" AS "Target__species_taxon_id"", ""Target"."ins_user_id" AS "Target__ins_user_id"", ""Target"."upd_user_id" AS "Target__upd_user_id"", ""Target"."stage" AS "Target__stage"", ""Target"."hidden" AS "Target__hidden"", ""Target"."submitter_id" AS "Target__submitter_id"", ""Target"."selection_db_id" AS "Target__selection_db_id"", ""Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id"", ""Target"."batch" AS "Target__batch"", ""Target"."genus_taxon_id" AS "Target__genus_taxon_id"", ""Target"."seguid" AS "Target__seguid"", ""Target"."uniprot_id" AS "Target__uniprot_id"", ""Target"."ec" AS "Target__ec"", ""Target"."target_family" AS "Target__target_family"", ""Target"."tar_designpool_id" AS "Target__tar_designpool_id"", ""Target"."community_nominated" AS "Target__community_nominated"", ""Target"."partnership_nominated" AS "Target__partnership_nominated"", ""Target"."biomedical" AS "Target__biomedical"", ""Target"."metagenomic" AS "Target__metagenomic"", ""Target"."structural_coverage" AS "Target__structural_coverage"", ""Target"."psi2" AS "Target__psi2"", ""Target"."legacy" AS "Target__legacy"", ""Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner"", ""Target"."functional_mutant" AS "Target__functional_mutant"", ""Target"."conformational_state" AS "Target__conformational_state"", ""Target"."disease" AS "Target__disease"", ""Target"."individual_organism" AS "Target__individual_organism"", ""Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance"", ""Target"."general_domain_family" AS "Target__general_domain_family"", ""Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family"", ""Target"."first_structure_of_class" AS "Target__first_structure_of_class"", ""Target"."functional_follow_up" AS "Target__functional_follow_up"", ""Target"."technology_development" AS "Target__technology_development"", ""Target"."membrane_protein" AS "Target__membrane_protein"", ""Target"."translated_dna_sequence" AS "Target__translated_dna_sequence"", ""Target"."family_coverage" AS "Target__family_coverage"", ""Target"."family_coverage_date" AS "Target__family_coverage_date"", ""Target"."distribution_lab" AS "Target__distribution_lab"", ""Target"."uniprot_accession" AS "Target__uniprot_accession"", ""Target"."protocol_id" AS "Target__protocol_id"", ""Target"."ensembl_protein_id" AS "Target__ensembl_protein_id"", ""Target"."ensembl_gene_id" AS "Target__ensembl_gene_id"", ""Target"."type" AS "Target__type"", ""Target"."ligand_studies" AS "Target__ligand_studies"", ""Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships"", ""Target"."single_domain_protein" AS "Target__single_domain_protein"", ""Target"."multidomain_protein" AS "Target__multidomain_protein"", ""Target"."oligomeric_protein" AS "Target__oligomeric_protein"", ""Target"."eukaryotic_protein" AS "Target__eukaryotic_protein"", ""Target"."protein_protein_complex" AS "Target__protein_protein_complex"", ""Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex"", ""Target"."protein_ligand_complex" AS "Target__protein_ligand_complex"", ""Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein"", ""Target"."post_translational_modification" AS "Target__post_translational_modification"" ), "joins" => array(), "order" => array(), "limit" => array(), "offset" => array(), "group" => array() ) $linkedModels = array( "belongsTo/Project" => true, "belongsTo/Organism" => true, "belongsTo/Species" => true, "belongsTo/Stage" => true, "hasOne/ProteinPdbHomolog" => true, "hasOne/RequestTarget" => true, "hasOne/TargetPlanning" => true ) $_associations = array( "belongsTo", "hasOne", "hasMany", "hasAndBelongsToMany" ) $type = "hasMany" $assoc = "ProteinClone" $assocData = array( "className" => "ProteinClone", "foreignKey" => "target_id" ) $linkModel = null $external = false $this = DboPostgres DboPostgres::$description = "PostgreSQL DBO Driver" DboPostgres::$_commands = array DboPostgres::$_baseConfig = array DboPostgres::$columns = array DboPostgres::$startQuote = """ DboPostgres::$endQuote = """ DboPostgres::$_sequenceMap = array DboPostgres::$column_query = "(SELECT current_database()::information_schema.sql_identifier AS table_catalog, nc.nspname::information_schema.sql_identifier AS table_schema, c.relname::information_schema.sql_identifier AS table_name, a.attname::information_schema.sql_identifier AS column_name, a.attnum::information_schema.cardinal_number AS ordinal_position, pg_get_expr(ad.adbin, ad.adrelid)::information_schema.character_data AS column_default, CASE WHEN a.attnotnull OR t.typtype = 'd'::"char" AND t.typnotnull THEN 'NO'::text ELSE 'YES'::text END::information_schema.yes_or_no AS is_nullable, CASE WHEN t.typtype = 'd'::"char" THEN CASE WHEN bt.typelem <> 0::oid AND bt.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nbt.nspname = 'pg_catalog'::name THEN format_type(t.typbasetype, NULL::integer) ELSE 'USER-DEFINED'::text END ELSE CASE WHEN t.typelem <> 0::oid AND t.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nt.nspname = 'pg_catalog'::name THEN format_type(a.atttypid, NULL::integer) ELSE 'USER-DEFINED'::text END END::information_schema.character_data AS data_type, information_schema._pg_char_max_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_maximum_length, information_schema._pg_char_octet_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_octet_length, information_schema._pg_numeric_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision, information_schema._pg_numeric_precision_radix(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision_radix, information_schema._pg_numeric_scale(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_scale, information_schema._pg_datetime_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS datetime_precision, information_schema._pg_interval_type(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.character_data AS interval_type, NULL::integer::information_schema.cardinal_number AS interval_precision, NULL::character varying::information_schema.sql_identifier AS character_set_catalog, NULL::character varying::information_schema.sql_identifier AS character_set_schema, NULL::character varying::information_schema.sql_identifier AS character_set_name, CASE WHEN nco.nspname IS NOT NULL THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS collation_catalog, nco.nspname::information_schema.sql_identifier AS collation_schema, co.collname::information_schema.sql_identifier AS collation_name, CASE WHEN t.typtype = 'd'::"char" THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS domain_catalog, CASE WHEN t.typtype = 'd'::"char" THEN nt.nspname ELSE NULL::name END::information_schema.sql_identifier AS domain_schema, CASE WHEN t.typtype = 'd'::"char" THEN t.typname ELSE NULL::name END::information_schema.sql_identifier AS domain_name, current_database()::information_schema.sql_identifier AS udt_catalog, COALESCE(nbt.nspname, nt.nspname)::information_schema.sql_identifier AS udt_schema, COALESCE(bt.typname, t.typname)::information_schema.sql_identifier AS udt_name, NULL::character varying::information_schema.sql_identifier AS scope_catalog, NULL::character varying::information_schema.sql_identifier AS scope_schema, NULL::character varying::information_schema.sql_identifier AS scope_name, NULL::integer::information_schema.cardinal_number AS maximum_cardinality, a.attnum::information_schema.sql_identifier AS dtd_identifier, 'NO'::character varying::information_schema.yes_or_no AS is_self_referencing, CASE WHEN a.attidentity = ANY (ARRAY['a'::"char", 'd'::"char"]) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_identity, CASE a.attidentity WHEN 'a'::"char" THEN 'ALWAYS'::text WHEN 'd'::"char" THEN 'BY DEFAULT'::text ELSE NULL::text END::information_schema.character_data AS identity_generation, seq.seqstart::information_schema.character_data AS identity_start, seq.seqincrement::information_schema.character_data AS identity_increment, seq.seqmax::information_schema.character_data AS identity_maximum, seq.seqmin::information_schema.character_data AS identity_minimum, CASE WHEN seq.seqcycle THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS identity_cycle, 'NEVER'::character varying::information_schema.character_data AS is_generated, NULL::character varying::information_schema.character_data AS generation_expression, CASE WHEN (c.relkind = ANY (ARRAY['r'::"char", 'p'::"char"])) OR (c.relkind = ANY (ARRAY['v'::"char", 'm'::"char", 'f'::"char"])) AND pg_column_is_updatable(c.oid::regclass, a.attnum, false) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_updatable FROM pg_attribute a LEFT JOIN pg_attrdef ad ON a.attrelid = ad.adrelid AND a.attnum = ad.adnum JOIN (pg_class c JOIN pg_namespace nc ON c.relnamespace = nc.oid) ON a.attrelid = c.oid JOIN (pg_type t JOIN pg_namespace nt ON t.typnamespace = nt.oid) ON a.atttypid = t.oid LEFT JOIN (pg_type bt JOIN pg_namespace nbt ON bt.typnamespace = nbt.oid) ON t.typtype = 'd'::"char" AND t.typbasetype = bt.oid LEFT JOIN (pg_collation co JOIN pg_namespace nco ON co.collnamespace = nco.oid) ON a.attcollation = co.oid AND (nco.nspname <> 'pg_catalog'::name OR co.collname <> 'default'::name) LEFT JOIN (pg_depend dep JOIN pg_sequence seq ON dep.classid = 'pg_class'::regclass::oid AND dep.objid = seq.seqrelid AND dep.deptype = 'i'::"char") ON dep.refclassid = 'pg_class'::regclass::oid AND dep.refobjid = c.oid AND dep.refobjsubid = a.attnum WHERE NOT pg_is_other_temp_schema(nc.oid) AND a.attnum > 0 AND NOT a.attisdropped AND (c.relkind = ANY (ARRAY['r'::"char", 'v'::"char", 'm'::"char", 'f'::"char", 'p'::"char"])) AND (pg_has_role(c.relowner, 'USAGE'::text) OR has_column_privilege(c.oid, a.attnum, 'SELECT, INSERT, UPDATE, REFERENCES'::text))) as is_columns" DboPostgres::$index = array DboPostgres::$alias = "AS " DboPostgres::$methodCache = array DboPostgres::$cacheMethods = true DboPostgres::$__bypass = false DboPostgres::$__sqlOps = array DboPostgres::$virtualFieldSeparator = "__" DboPostgres::$tableParameters = array DboPostgres::$fieldParameters = array DboPostgres::$connected = true DboPostgres::$fullDebug = true DboPostgres::$error = NULL DboPostgres::$affected = 1 DboPostgres::$numRows = 1 DboPostgres::$took = 0 DboPostgres::$_result = resource DboPostgres::$_queriesCnt = 32 DboPostgres::$_queriesTime = 48 DboPostgres::$_queriesLog = array DboPostgres::$_queriesLogMax = 700 DboPostgres::$_queryCache = array DboPostgres::$__descriptions = array DboPostgres::$_sources = array DboPostgres::$connection = resource DboPostgres::$config = array DboPostgres::$configKeyName = "default" DboPostgres::$_transactionStarted = false DboPostgres::$cacheSources = true DboPostgres::$results = resource DboPostgres::$map = array DboPostgres::$__booleans = array $query = "SELECT "Target"."id" AS "Target__id", "Target"."target_id" AS "Target__target_id", "Target"."local_target_id" AS "Target__local_target_id", "Target"."locus_tag" AS "Target__locus_tag", "Target"."ncbi_gi" AS "Target__ncbi_gi", "Target"."ncbi_accession" AS "Target__ncbi_accession", "Target"."ncbi_geneid" AS "Target__ncbi_geneid", "Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id", "Target"."gene_name" AS "Target__gene_name", "Target"."common_name" AS "Target__common_name", "Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region", "Target"."ncbi_note" AS "Target__ncbi_note", "Target"."tigr_main_role_id" AS "Target__tigr_main_role_id", "Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id", "Target"."comment" AS "Target__comment", "Target"."justification" AS "Target__justification", "Target"."sequence" AS "Target__sequence", "Target"."sequence_length" AS "Target__sequence_length", "Target"."dna_sequence" AS "Target__dna_sequence", "Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi", "Target"."priority" AS "Target__priority", "Target"."project" AS "Target__project", "Target"."selection_phase" AS "Target__selection_phase", "Target"."date_selected" AS "Target__date_selected", "Target"."date_approved" AS "Target__date_approved", "Target"."completion_code" AS "Target__completion_code", "Target"."pi" AS "Target__pi", "Target"."tms" AS "Target__tms", "Target"."sp" AS "Target__sp", "Target"."core_genome" AS "Target__core_genome", "Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog", "Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog", "Target"."protease_motifs" AS "Target__protease_motifs", "Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism", "Target"."study_id" AS "Target__study_id", "Target"."drug_target_homologs" AS "Target__drug_target_homologs", "Target"."virulence_genes" AS "Target__virulence_genes", "Target"."essential_genes_homologs" AS "Target__essential_genes_homologs", "Target"."dna_binding_motifs" AS "Target__dna_binding_motifs", "Target"."inserted" AS "Target__inserted", "Target"."updated" AS "Target__updated", "Target"."species_taxon_id" AS "Target__species_taxon_id", "Target"."ins_user_id" AS "Target__ins_user_id", "Target"."upd_user_id" AS "Target__upd_user_id", "Target"."stage" AS "Target__stage", "Target"."hidden" AS "Target__hidden", "Target"."submitter_id" AS "Target__submitter_id", "Target"."selection_db_id" AS "Target__selection_db_id", "Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id", "Target"."batch" AS "Target__batch", "Target"."genus_taxon_id" AS "Target__genus_taxon_id", "Target"."seguid" AS "Target__seguid", "Target"."uniprot_id" AS "Target__uniprot_id", "Target"."ec" AS "Target__ec", "Target"."target_family" AS "Target__target_family", "Target"."tar_designpool_id" AS "Target__tar_designpool_id", "Target"."community_nominated" AS "Target__community_nominated", "Target"."partnership_nominated" AS "Target__partnership_nominated", "Target"."biomedical" AS "Target__biomedical", "Target"."metagenomic" AS "Target__metagenomic", "Target"."structural_coverage" AS "Target__structural_coverage", "Target"."psi2" AS "Target__psi2", "Target"."legacy" AS "Target__legacy", "Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner", "Target"."functional_mutant" AS "Target__functional_mutant", "Target"."conformational_state" AS "Target__conformational_state", "Target"."disease" AS "Target__disease", "Target"."individual_organism" AS "Target__individual_organism", "Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance", "Target"."general_domain_family" AS "Target__general_domain_family", "Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family", "Target"."first_structure_of_class" AS "Target__first_structure_of_class", "Target"."functional_follow_up" AS "Target__functional_follow_up", "Target"."technology_development" AS "Target__technology_development", "Target"."membrane_protein" AS "Target__membrane_protein", "Target"."translated_dna_sequence" AS "Target__translated_dna_sequence", "Target"."family_coverage" AS "Target__family_coverage", "Target"."family_coverage_date" AS "Target__family_coverage_date", "Target"."distribution_lab" AS "Target__distribution_lab", "Target"."uniprot_accession" AS "Target__uniprot_accession", "Target"."protocol_id" AS "Target__protocol_id", "Target"."ensembl_protein_id" AS "Target__ensembl_protein_id", "Target"."ensembl_gene_id" AS "Target__ensembl_gene_id", "Target"."type" AS "Target__type", "Target"."ligand_studies" AS "Target__ligand_studies", "Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships", "Target"."single_domain_protein" AS "Target__single_domain_protein", "Target"."multidomain_protein" AS "Target__multidomain_protein", "Target"."oligomeric_protein" AS "Target__oligomeric_protein", "Target"."eukaryotic_protein" AS "Target__eukaryotic_protein", "Target"."protein_protein_complex" AS "Target__protein_protein_complex", "Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex", "Target"."protein_ligand_complex" AS "Target__protein_ligand_complex", "Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein", "Target"."post_translational_modification" AS "Target__post_translational_modification", "Project"."protein_target_id" AS "Project__protein_target_id", "Project"."pdb_id" AS "Project__pdb_id", "Project"."chain_id" AS "Project__chain_id", "Project"."sequence_identity" AS "Project__sequence_identity", "Project"."organism" AS "Project__organism", "Organism"."tax_id" AS "Organism__tax_id", "Organism"."name_text" AS "Organism__name_text", "Organism"."unique_name" AS "Organism__unique_name", "Organism"."name_class" AS "Organism__name_class", "Species"."tax_id" AS "Species__tax_id", "Species"."name_text" AS "Species__name_text", "Species"."unique_name" AS "Species__unique_name", "Species"."name_class" AS "Species__name_class", "Stage"."sequence" AS "Stage__sequence", "Stage"."name" AS "Stage__name", "ProteinPdbHomolog"."protein_target_id" AS "ProteinPdbHomolog__protein_target_id", "ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id", "ProteinPdbHomolog"."chain_id" AS "ProteinPdbHomolog__chain_id", "ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity", "ProteinPdbHomolog"."organism" AS "ProteinPdbHomolog__organism", "RequestTarget"."id" AS "RequestTarget__id", "RequestTarget"."gi" AS "RequestTarget__gi", "RequestTarget"."ncbi_accver" AS "RequestTarget__ncbi_accver", "RequestTarget"."sequence" AS "RequestTarget__sequence", "RequestTarget"."ncbi_taxon_id" AS "RequestTarget__ncbi_taxon_id", "RequestTarget"."organism" AS "RequestTarget__organism", "RequestTarget"."comment" AS "RequestTarget__comment", "RequestTarget"."person_id" AS "RequestTarget__person_id", "RequestTarget"."justification" AS "RequestTarget__justification", "RequestTarget"."resources" AS "RequestTarget__resources", "RequestTarget"."agreement_clicked" AS "RequestTarget__agreement_clicked", "RequestTarget"."approved" AS "RequestTarget__approved", "RequestTarget"."target_id" AS "RequestTarget__target_id", "RequestTarget"."inserted" AS "RequestTarget__inserted", "RequestTarget"."updated" AS "RequestTarget__updated", "RequestTarget"."dna_sequence" AS "RequestTarget__dna_sequence", "RequestTarget"."dna_source" AS "RequestTarget__dna_source", "RequestTarget"."dna_source_taxon_id" AS "RequestTarget__dna_source_taxon_id", "RequestTarget"."center" AS "RequestTarget__center", "RequestTarget"."community_interest" AS "RequestTarget__community_interest", "TargetPlanning"."id" AS "TargetPlanning__id", "TargetPlanning"."target_id" AS "TargetPlanning__target_id", "TargetPlanning"."source_file" AS "TargetPlanning__source_file", "TargetPlanning"."target_type" AS "TargetPlanning__target_type", "TargetPlanning"."genomic_dna_source" AS "TargetPlanning__genomic_dna_source", "TargetPlanning"."genomic_dna_status" AS "TargetPlanning__genomic_dna_status", "TargetPlanning"."notes1" AS "TargetPlanning__notes1", "TargetPlanning"."id1" AS "TargetPlanning__id1", "TargetPlanning"."notes2" AS "TargetPlanning__notes2", "TargetPlanning"."id2" AS "TargetPlanning__id2", "TargetPlanning"."ortholog_rescue" AS "TargetPlanning__ortholog_rescue", "TargetPlanning"."codon_optimization" AS "TargetPlanning__codon_optimization", "TargetPlanning"."should_solve_structure" AS "TargetPlanning__should_solve_structure", "TargetPlanning"."inserted" AS "TargetPlanning__inserted", "TargetPlanning"."updated" AS "TargetPlanning__updated", "TargetPlanning"."operon_colocalization" AS "TargetPlanning__operon_colocalization" FROM "protein_target" AS "Target" LEFT JOIN "protein_pdb_homolog_table" AS "Project" ON ("Target"."target_id" = "Project"."protein_target_id") LEFT JOIN "names" AS "Organism" ON ("Target"."ncbi_taxon_id" = "Organism"."tax_id" AND "Organism"."name_class" = 'scientific name') LEFT JOIN "names" AS "Species" ON ("Target"."species_taxon_id" = "Species"."tax_id" AND "Species"."name_class" = 'scientific name') LEFT JOIN "stage" AS "Stage" ON ("Target"."stage" = "Stage"."name") LEFT JOIN "protein_pdb_homolog_table" AS "ProteinPdbHomolog" ON ("ProteinPdbHomolog"."protein_target_id" = "Target"."target_id") LEFT JOIN "request_target" AS "RequestTarget" ON ("RequestTarget"."target_id" = "Target"."target_id") LEFT JOIN "target_planning" AS "TargetPlanning" ON ("TargetPlanning"."target_id" = "Target"."target_id") WHERE "Target"."target_id" = '016735' LIMIT 1" $resultSet = array( array( "Target" => array(), "Project" => array(), "Organism" => array(), "Species" => array(), "Stage" => array(), "ProteinPdbHomolog" => array(), "RequestTarget" => array(), "TargetPlanning" => array(), "SubTarget" => array() ) ) $filtered = array( "Project", "Organism", "Species", "Stage", "ProteinPdbHomolog", "RequestTarget", "TargetPlanning", "SubTarget" ) $stack = array( "SubTarget" )DboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 841 Model::find() - CORE/cake/libs/model/model.php, line 2153 DboSource::query() - CORE/cake/libs/model/datasources/dbo_source.php, line 350 Model::call__() - CORE/cake/libs/model/model.php, line 511 Overloadable::__call() - CORE/cake/libs/overloadable_php5.php, line 50 Target::findByTargetId() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_Target::findById() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_ActionsHelper::create() - /var/www/unitrack/views/helpers/unitrack_actions.php, line 309 include - APP/views/layouts/default.ctp, line 81 View::_render() - CORE/cake/libs/view/view.php, line 736 View::renderLayout() - CORE/cake/libs/view/view.php, line 494 View::render() - CORE/cake/libs/view/view.php, line 440 Controller::render() - CORE/cake/libs/controller/controller.php, line 909 ErrorHandler::_outputMessage() - CORE/cake/libs/error.php, line 458 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 261 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112 ErrorHandler::__construct() - CORE/cake/libs/error.php, line 125 Object::cakeError() - CORE/cake/libs/object.php, line 201
Notice (8): Trying to get property of non-object [CORE/cake/libs/model/datasources/dbo_source.php, line 844]Code | Contextreturn false;
}
$results = $db->read($this, $query);
$model = Target Target::$validate = array Target::$name = "Target" Target::$useTable = "protein_target" Target::$primaryKey = "target_id" Target::$belongsTo = array Target::$hasMany = array Target::$hasOne = array Target::$hasAndBelongsToMany = array Target::$actsAs = array Target::$useDbConfig = "default" Target::$displayField = "target_id" Target::$id = false Target::$data = array Target::$table = "protein_target" Target::$_schema = array Target::$validationErrors = array Target::$tablePrefix = "" Target::$alias = "Target" Target::$tableToModel = array Target::$logTransactions = false Target::$cacheQueries = false Target::$Behaviors = BehaviorCollection object Target::$whitelist = array Target::$cacheSources = true Target::$findQueryType = "first" Target::$recursive = 1 Target::$order = NULL Target::$virtualFields = array Target::$__associationKeys = array Target::$__associations = array Target::$__backAssociation = array Target::$__insertID = NULL Target::$__numRows = NULL Target::$__affectedRows = NULL Target::$__safeUpdateMode = false Target::$_findMethods = array Target::$Project = Project object Target::$Organism = TaxonomyName object Target::$Species = TaxonomyName object Target::$Stage = Stage object Target::$ProteinPdbHomolog = ProteinPdbHomolog object Target::$RequestTarget = RequestTarget object Target::$TargetPlanning = TargetPlanning object Target::$SubTarget = Subtarget object Target::$ProteinClone = NULL Target::$Purification = NULL Target::$Expression = NULL Target::$Deposit = NULL Target::$Dataset = NULL Target::$CrystalHarvest = NULL Target::$Justification = NULL $queryData = array( "conditions" => array( "Target.target_id" => "016735" ), "fields" => array( ""Target"."id" AS "Target__id"", ""Target"."target_id" AS "Target__target_id"", ""Target"."local_target_id" AS "Target__local_target_id"", ""Target"."locus_tag" AS "Target__locus_tag"", ""Target"."ncbi_gi" AS "Target__ncbi_gi"", ""Target"."ncbi_accession" AS "Target__ncbi_accession"", ""Target"."ncbi_geneid" AS "Target__ncbi_geneid"", ""Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id"", ""Target"."gene_name" AS "Target__gene_name"", ""Target"."common_name" AS "Target__common_name"", ""Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region"", ""Target"."ncbi_note" AS "Target__ncbi_note"", ""Target"."tigr_main_role_id" AS "Target__tigr_main_role_id"", ""Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id"", ""Target"."comment" AS "Target__comment"", ""Target"."justification" AS "Target__justification"", ""Target"."sequence" AS "Target__sequence"", ""Target"."sequence_length" AS "Target__sequence_length"", ""Target"."dna_sequence" AS "Target__dna_sequence"", ""Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi"", ""Target"."priority" AS "Target__priority"", ""Target"."project" AS "Target__project"", ""Target"."selection_phase" AS "Target__selection_phase"", ""Target"."date_selected" AS "Target__date_selected"", ""Target"."date_approved" AS "Target__date_approved"", ""Target"."completion_code" AS "Target__completion_code"", ""Target"."pi" AS "Target__pi"", ""Target"."tms" AS "Target__tms"", ""Target"."sp" AS "Target__sp"", ""Target"."core_genome" AS "Target__core_genome"", ""Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog"", ""Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog"", ""Target"."protease_motifs" AS "Target__protease_motifs"", ""Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism"", ""Target"."study_id" AS "Target__study_id"", ""Target"."drug_target_homologs" AS "Target__drug_target_homologs"", ""Target"."virulence_genes" AS "Target__virulence_genes"", ""Target"."essential_genes_homologs" AS "Target__essential_genes_homologs"", ""Target"."dna_binding_motifs" AS "Target__dna_binding_motifs"", ""Target"."inserted" AS "Target__inserted"", ""Target"."updated" AS "Target__updated"", ""Target"."species_taxon_id" AS "Target__species_taxon_id"", ""Target"."ins_user_id" AS "Target__ins_user_id"", ""Target"."upd_user_id" AS "Target__upd_user_id"", ""Target"."stage" AS "Target__stage"", ""Target"."hidden" AS "Target__hidden"", ""Target"."submitter_id" AS "Target__submitter_id"", ""Target"."selection_db_id" AS "Target__selection_db_id"", ""Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id"", ""Target"."batch" AS "Target__batch"", ""Target"."genus_taxon_id" AS "Target__genus_taxon_id"", ""Target"."seguid" AS "Target__seguid"", ""Target"."uniprot_id" AS "Target__uniprot_id"", ""Target"."ec" AS "Target__ec"", ""Target"."target_family" AS "Target__target_family"", ""Target"."tar_designpool_id" AS "Target__tar_designpool_id"", ""Target"."community_nominated" AS "Target__community_nominated"", ""Target"."partnership_nominated" AS "Target__partnership_nominated"", ""Target"."biomedical" AS "Target__biomedical"", ""Target"."metagenomic" AS "Target__metagenomic"", ""Target"."structural_coverage" AS "Target__structural_coverage"", ""Target"."psi2" AS "Target__psi2"", ""Target"."legacy" AS "Target__legacy"", ""Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner"", ""Target"."functional_mutant" AS "Target__functional_mutant"", ""Target"."conformational_state" AS "Target__conformational_state"", ""Target"."disease" AS "Target__disease"", ""Target"."individual_organism" AS "Target__individual_organism"", ""Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance"", ""Target"."general_domain_family" AS "Target__general_domain_family"", ""Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family"", ""Target"."first_structure_of_class" AS "Target__first_structure_of_class"", ""Target"."functional_follow_up" AS "Target__functional_follow_up"", ""Target"."technology_development" AS "Target__technology_development"", ""Target"."membrane_protein" AS "Target__membrane_protein"", ""Target"."translated_dna_sequence" AS "Target__translated_dna_sequence"", ""Target"."family_coverage" AS "Target__family_coverage"", ""Target"."family_coverage_date" AS "Target__family_coverage_date"", ""Target"."distribution_lab" AS "Target__distribution_lab"", ""Target"."uniprot_accession" AS "Target__uniprot_accession"", ""Target"."protocol_id" AS "Target__protocol_id"", ""Target"."ensembl_protein_id" AS "Target__ensembl_protein_id"", ""Target"."ensembl_gene_id" AS "Target__ensembl_gene_id"", ""Target"."type" AS "Target__type"", ""Target"."ligand_studies" AS "Target__ligand_studies"", ""Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships"", ""Target"."single_domain_protein" AS "Target__single_domain_protein"", ""Target"."multidomain_protein" AS "Target__multidomain_protein"", ""Target"."oligomeric_protein" AS "Target__oligomeric_protein"", ""Target"."eukaryotic_protein" AS "Target__eukaryotic_protein"", ""Target"."protein_protein_complex" AS "Target__protein_protein_complex"", ""Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex"", ""Target"."protein_ligand_complex" AS "Target__protein_ligand_complex"", ""Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein"", ""Target"."post_translational_modification" AS "Target__post_translational_modification"", ""Target"."target_id" AS "Target__target_id"", ""Project"."protein_target_id" AS "Project__protein_target_id"", ""Project"."pdb_id" AS "Project__pdb_id"", ""Project"."chain_id" AS "Project__chain_id"", ""Project"."sequence_identity" AS "Project__sequence_identity"", ""Project"."organism" AS "Project__organism"", ""Target"."target_id" AS "Target__target_id"", ""Organism"."tax_id" AS "Organism__tax_id"", ""Organism"."name_text" AS "Organism__name_text"", ""Organism"."unique_name" AS "Organism__unique_name"", ""Organism"."name_class" AS "Organism__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Species"."tax_id" AS "Species__tax_id"", ""Species"."name_text" AS "Species__name_text"", ""Species"."unique_name" AS "Species__unique_name"", ""Species"."name_class" AS "Species__name_class"", ""Target"."target_id" AS "Target__target_id"", ""Stage"."sequence" AS "Stage__sequence"", ""Stage"."name" AS "Stage__name"", ""Target"."target_id" AS "Target__target_id"", ""ProteinPdbHomolog"."protein_target_id" AS "ProteinPdbHomolog__protein_target_id"", ""ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id"", ""ProteinPdbHomolog"."chain_id" AS "ProteinPdbHomolog__chain_id"", ""ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity"", ""ProteinPdbHomolog"."organism" AS "ProteinPdbHomolog__organism"", ""Target"."target_id" AS "Target__target_id"", ""RequestTarget"."id" AS "RequestTarget__id"", ""RequestTarget"."gi" AS "RequestTarget__gi"", ""RequestTarget"."ncbi_accver" AS "RequestTarget__ncbi_accver"", ""RequestTarget"."sequence" AS "RequestTarget__sequence"", ""RequestTarget"."ncbi_taxon_id" AS "RequestTarget__ncbi_taxon_id"", ""RequestTarget"."organism" AS "RequestTarget__organism"", ""RequestTarget"."comment" AS "RequestTarget__comment"", ""RequestTarget"."person_id" AS "RequestTarget__person_id"", ""RequestTarget"."justification" AS "RequestTarget__justification"", ""RequestTarget"."resources" AS "RequestTarget__resources"", ""RequestTarget"."agreement_clicked" AS "RequestTarget__agreement_clicked"", ""RequestTarget"."approved" AS "RequestTarget__approved"", ""RequestTarget"."target_id" AS "RequestTarget__target_id"", ""RequestTarget"."inserted" AS "RequestTarget__inserted"", ""RequestTarget"."updated" AS "RequestTarget__updated"", ""RequestTarget"."dna_sequence" AS "RequestTarget__dna_sequence"", ""RequestTarget"."dna_source" AS "RequestTarget__dna_source"", ""RequestTarget"."dna_source_taxon_id" AS "RequestTarget__dna_source_taxon_id"", ""RequestTarget"."center" AS "RequestTarget__center"", ""RequestTarget"."community_interest" AS "RequestTarget__community_interest"", ""Target"."target_id" AS "Target__target_id"", ""TargetPlanning"."id" AS "TargetPlanning__id"", ""TargetPlanning"."target_id" AS "TargetPlanning__target_id"", ""TargetPlanning"."source_file" AS "TargetPlanning__source_file"", ""TargetPlanning"."target_type" AS "TargetPlanning__target_type"", ""TargetPlanning"."genomic_dna_source" AS "TargetPlanning__genomic_dna_source"", ""TargetPlanning"."genomic_dna_status" AS "TargetPlanning__genomic_dna_status"", ""TargetPlanning"."notes1" AS "TargetPlanning__notes1"", ""TargetPlanning"."id1" AS "TargetPlanning__id1"", ""TargetPlanning"."notes2" AS "TargetPlanning__notes2"", ""TargetPlanning"."id2" AS "TargetPlanning__id2"", ""TargetPlanning"."ortholog_rescue" AS "TargetPlanning__ortholog_rescue"", ""TargetPlanning"."codon_optimization" AS "TargetPlanning__codon_optimization"", ""TargetPlanning"."should_solve_structure" AS "TargetPlanning__should_solve_structure"", ""TargetPlanning"."inserted" AS "TargetPlanning__inserted"", ""TargetPlanning"."updated" AS "TargetPlanning__updated"", ""TargetPlanning"."operon_colocalization" AS "TargetPlanning__operon_colocalization"", ""Target"."target_id" AS "Target__target_id"", ""Target"."target_id" AS "Target__target_id"" ), "joins" => array( array(), array(), array(), array(), array(), array(), array() ), "limit" => 1, "offset" => array(), "order" => array( array() ), "page" => 1, "group" => array(), "callbacks" => true, "recursive" => null ) $recursive = null $null = null $array = array( "callbacks" => true, "conditions" => array(), "fields" => array( ""Target"."id" AS "Target__id"", ""Target"."target_id" AS "Target__target_id"", ""Target"."local_target_id" AS "Target__local_target_id"", ""Target"."locus_tag" AS "Target__locus_tag"", ""Target"."ncbi_gi" AS "Target__ncbi_gi"", ""Target"."ncbi_accession" AS "Target__ncbi_accession"", ""Target"."ncbi_geneid" AS "Target__ncbi_geneid"", ""Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id"", ""Target"."gene_name" AS "Target__gene_name"", ""Target"."common_name" AS "Target__common_name"", ""Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region"", ""Target"."ncbi_note" AS "Target__ncbi_note"", ""Target"."tigr_main_role_id" AS "Target__tigr_main_role_id"", ""Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id"", ""Target"."comment" AS "Target__comment"", ""Target"."justification" AS "Target__justification"", ""Target"."sequence" AS "Target__sequence"", ""Target"."sequence_length" AS "Target__sequence_length"", ""Target"."dna_sequence" AS "Target__dna_sequence"", ""Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi"", ""Target"."priority" AS "Target__priority"", ""Target"."project" AS "Target__project"", ""Target"."selection_phase" AS "Target__selection_phase"", ""Target"."date_selected" AS "Target__date_selected"", ""Target"."date_approved" AS "Target__date_approved"", ""Target"."completion_code" AS "Target__completion_code"", ""Target"."pi" AS "Target__pi"", ""Target"."tms" AS "Target__tms"", ""Target"."sp" AS "Target__sp"", ""Target"."core_genome" AS "Target__core_genome"", ""Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog"", ""Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog"", ""Target"."protease_motifs" AS "Target__protease_motifs"", ""Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism"", ""Target"."study_id" AS "Target__study_id"", ""Target"."drug_target_homologs" AS "Target__drug_target_homologs"", ""Target"."virulence_genes" AS "Target__virulence_genes"", ""Target"."essential_genes_homologs" AS "Target__essential_genes_homologs"", ""Target"."dna_binding_motifs" AS "Target__dna_binding_motifs"", ""Target"."inserted" AS "Target__inserted"", ""Target"."updated" AS "Target__updated"", ""Target"."species_taxon_id" AS "Target__species_taxon_id"", ""Target"."ins_user_id" AS "Target__ins_user_id"", ""Target"."upd_user_id" AS "Target__upd_user_id"", ""Target"."stage" AS "Target__stage"", ""Target"."hidden" AS "Target__hidden"", ""Target"."submitter_id" AS "Target__submitter_id"", ""Target"."selection_db_id" AS "Target__selection_db_id"", ""Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id"", ""Target"."batch" AS "Target__batch"", ""Target"."genus_taxon_id" AS "Target__genus_taxon_id"", ""Target"."seguid" AS "Target__seguid"", ""Target"."uniprot_id" AS "Target__uniprot_id"", ""Target"."ec" AS "Target__ec"", ""Target"."target_family" AS "Target__target_family"", ""Target"."tar_designpool_id" AS "Target__tar_designpool_id"", ""Target"."community_nominated" AS "Target__community_nominated"", ""Target"."partnership_nominated" AS "Target__partnership_nominated"", ""Target"."biomedical" AS "Target__biomedical"", ""Target"."metagenomic" AS "Target__metagenomic"", ""Target"."structural_coverage" AS "Target__structural_coverage"", ""Target"."psi2" AS "Target__psi2"", ""Target"."legacy" AS "Target__legacy"", ""Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner"", ""Target"."functional_mutant" AS "Target__functional_mutant"", ""Target"."conformational_state" AS "Target__conformational_state"", ""Target"."disease" AS "Target__disease"", ""Target"."individual_organism" AS "Target__individual_organism"", ""Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance"", ""Target"."general_domain_family" AS "Target__general_domain_family"", ""Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family"", ""Target"."first_structure_of_class" AS "Target__first_structure_of_class"", ""Target"."functional_follow_up" AS "Target__functional_follow_up"", ""Target"."technology_development" AS "Target__technology_development"", ""Target"."membrane_protein" AS "Target__membrane_protein"", ""Target"."translated_dna_sequence" AS "Target__translated_dna_sequence"", ""Target"."family_coverage" AS "Target__family_coverage"", ""Target"."family_coverage_date" AS "Target__family_coverage_date"", ""Target"."distribution_lab" AS "Target__distribution_lab"", ""Target"."uniprot_accession" AS "Target__uniprot_accession"", ""Target"."protocol_id" AS "Target__protocol_id"", ""Target"."ensembl_protein_id" AS "Target__ensembl_protein_id"", ""Target"."ensembl_gene_id" AS "Target__ensembl_gene_id"", ""Target"."type" AS "Target__type"", ""Target"."ligand_studies" AS "Target__ligand_studies"", ""Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships"", ""Target"."single_domain_protein" AS "Target__single_domain_protein"", ""Target"."multidomain_protein" AS "Target__multidomain_protein"", ""Target"."oligomeric_protein" AS "Target__oligomeric_protein"", ""Target"."eukaryotic_protein" AS "Target__eukaryotic_protein"", ""Target"."protein_protein_complex" AS "Target__protein_protein_complex"", ""Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex"", ""Target"."protein_ligand_complex" AS "Target__protein_ligand_complex"", ""Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein"", ""Target"."post_translational_modification" AS "Target__post_translational_modification"" ), "joins" => array(), "order" => array(), "limit" => array(), "offset" => array(), "group" => array() ) $linkedModels = array( "belongsTo/Project" => true, "belongsTo/Organism" => true, "belongsTo/Species" => true, "belongsTo/Stage" => true, "hasOne/ProteinPdbHomolog" => true, "hasOne/RequestTarget" => true, "hasOne/TargetPlanning" => true ) $_associations = array( "belongsTo", "hasOne", "hasMany", "hasAndBelongsToMany" ) $type = "hasMany" $assoc = "ProteinClone" $assocData = array( "className" => "ProteinClone", "foreignKey" => "target_id" ) $linkModel = null $external = false $this = DboPostgres DboPostgres::$description = "PostgreSQL DBO Driver" DboPostgres::$_commands = array DboPostgres::$_baseConfig = array DboPostgres::$columns = array DboPostgres::$startQuote = """ DboPostgres::$endQuote = """ DboPostgres::$_sequenceMap = array DboPostgres::$column_query = "(SELECT current_database()::information_schema.sql_identifier AS table_catalog, nc.nspname::information_schema.sql_identifier AS table_schema, c.relname::information_schema.sql_identifier AS table_name, a.attname::information_schema.sql_identifier AS column_name, a.attnum::information_schema.cardinal_number AS ordinal_position, pg_get_expr(ad.adbin, ad.adrelid)::information_schema.character_data AS column_default, CASE WHEN a.attnotnull OR t.typtype = 'd'::"char" AND t.typnotnull THEN 'NO'::text ELSE 'YES'::text END::information_schema.yes_or_no AS is_nullable, CASE WHEN t.typtype = 'd'::"char" THEN CASE WHEN bt.typelem <> 0::oid AND bt.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nbt.nspname = 'pg_catalog'::name THEN format_type(t.typbasetype, NULL::integer) ELSE 'USER-DEFINED'::text END ELSE CASE WHEN t.typelem <> 0::oid AND t.typlen = '-1'::integer THEN 'ARRAY'::text WHEN nt.nspname = 'pg_catalog'::name THEN format_type(a.atttypid, NULL::integer) ELSE 'USER-DEFINED'::text END END::information_schema.character_data AS data_type, information_schema._pg_char_max_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_maximum_length, information_schema._pg_char_octet_length(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS character_octet_length, information_schema._pg_numeric_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision, information_schema._pg_numeric_precision_radix(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_precision_radix, information_schema._pg_numeric_scale(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS numeric_scale, information_schema._pg_datetime_precision(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.cardinal_number AS datetime_precision, information_schema._pg_interval_type(information_schema._pg_truetypid(a.*, t.*), information_schema._pg_truetypmod(a.*, t.*))::information_schema.character_data AS interval_type, NULL::integer::information_schema.cardinal_number AS interval_precision, NULL::character varying::information_schema.sql_identifier AS character_set_catalog, NULL::character varying::information_schema.sql_identifier AS character_set_schema, NULL::character varying::information_schema.sql_identifier AS character_set_name, CASE WHEN nco.nspname IS NOT NULL THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS collation_catalog, nco.nspname::information_schema.sql_identifier AS collation_schema, co.collname::information_schema.sql_identifier AS collation_name, CASE WHEN t.typtype = 'd'::"char" THEN current_database() ELSE NULL::name END::information_schema.sql_identifier AS domain_catalog, CASE WHEN t.typtype = 'd'::"char" THEN nt.nspname ELSE NULL::name END::information_schema.sql_identifier AS domain_schema, CASE WHEN t.typtype = 'd'::"char" THEN t.typname ELSE NULL::name END::information_schema.sql_identifier AS domain_name, current_database()::information_schema.sql_identifier AS udt_catalog, COALESCE(nbt.nspname, nt.nspname)::information_schema.sql_identifier AS udt_schema, COALESCE(bt.typname, t.typname)::information_schema.sql_identifier AS udt_name, NULL::character varying::information_schema.sql_identifier AS scope_catalog, NULL::character varying::information_schema.sql_identifier AS scope_schema, NULL::character varying::information_schema.sql_identifier AS scope_name, NULL::integer::information_schema.cardinal_number AS maximum_cardinality, a.attnum::information_schema.sql_identifier AS dtd_identifier, 'NO'::character varying::information_schema.yes_or_no AS is_self_referencing, CASE WHEN a.attidentity = ANY (ARRAY['a'::"char", 'd'::"char"]) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_identity, CASE a.attidentity WHEN 'a'::"char" THEN 'ALWAYS'::text WHEN 'd'::"char" THEN 'BY DEFAULT'::text ELSE NULL::text END::information_schema.character_data AS identity_generation, seq.seqstart::information_schema.character_data AS identity_start, seq.seqincrement::information_schema.character_data AS identity_increment, seq.seqmax::information_schema.character_data AS identity_maximum, seq.seqmin::information_schema.character_data AS identity_minimum, CASE WHEN seq.seqcycle THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS identity_cycle, 'NEVER'::character varying::information_schema.character_data AS is_generated, NULL::character varying::information_schema.character_data AS generation_expression, CASE WHEN (c.relkind = ANY (ARRAY['r'::"char", 'p'::"char"])) OR (c.relkind = ANY (ARRAY['v'::"char", 'm'::"char", 'f'::"char"])) AND pg_column_is_updatable(c.oid::regclass, a.attnum, false) THEN 'YES'::text ELSE 'NO'::text END::information_schema.yes_or_no AS is_updatable FROM pg_attribute a LEFT JOIN pg_attrdef ad ON a.attrelid = ad.adrelid AND a.attnum = ad.adnum JOIN (pg_class c JOIN pg_namespace nc ON c.relnamespace = nc.oid) ON a.attrelid = c.oid JOIN (pg_type t JOIN pg_namespace nt ON t.typnamespace = nt.oid) ON a.atttypid = t.oid LEFT JOIN (pg_type bt JOIN pg_namespace nbt ON bt.typnamespace = nbt.oid) ON t.typtype = 'd'::"char" AND t.typbasetype = bt.oid LEFT JOIN (pg_collation co JOIN pg_namespace nco ON co.collnamespace = nco.oid) ON a.attcollation = co.oid AND (nco.nspname <> 'pg_catalog'::name OR co.collname <> 'default'::name) LEFT JOIN (pg_depend dep JOIN pg_sequence seq ON dep.classid = 'pg_class'::regclass::oid AND dep.objid = seq.seqrelid AND dep.deptype = 'i'::"char") ON dep.refclassid = 'pg_class'::regclass::oid AND dep.refobjid = c.oid AND dep.refobjsubid = a.attnum WHERE NOT pg_is_other_temp_schema(nc.oid) AND a.attnum > 0 AND NOT a.attisdropped AND (c.relkind = ANY (ARRAY['r'::"char", 'v'::"char", 'm'::"char", 'f'::"char", 'p'::"char"])) AND (pg_has_role(c.relowner, 'USAGE'::text) OR has_column_privilege(c.oid, a.attnum, 'SELECT, INSERT, UPDATE, REFERENCES'::text))) as is_columns" DboPostgres::$index = array DboPostgres::$alias = "AS " DboPostgres::$methodCache = array DboPostgres::$cacheMethods = true DboPostgres::$__bypass = false DboPostgres::$__sqlOps = array DboPostgres::$virtualFieldSeparator = "__" DboPostgres::$tableParameters = array DboPostgres::$fieldParameters = array DboPostgres::$connected = true DboPostgres::$fullDebug = true DboPostgres::$error = NULL DboPostgres::$affected = 1 DboPostgres::$numRows = 1 DboPostgres::$took = 0 DboPostgres::$_result = resource DboPostgres::$_queriesCnt = 32 DboPostgres::$_queriesTime = 48 DboPostgres::$_queriesLog = array DboPostgres::$_queriesLogMax = 700 DboPostgres::$_queryCache = array DboPostgres::$__descriptions = array DboPostgres::$_sources = array DboPostgres::$connection = resource DboPostgres::$config = array DboPostgres::$configKeyName = "default" DboPostgres::$_transactionStarted = false DboPostgres::$cacheSources = true DboPostgres::$results = resource DboPostgres::$map = array DboPostgres::$__booleans = array $query = "SELECT "Target"."id" AS "Target__id", "Target"."target_id" AS "Target__target_id", "Target"."local_target_id" AS "Target__local_target_id", "Target"."locus_tag" AS "Target__locus_tag", "Target"."ncbi_gi" AS "Target__ncbi_gi", "Target"."ncbi_accession" AS "Target__ncbi_accession", "Target"."ncbi_geneid" AS "Target__ncbi_geneid", "Target"."ncbi_taxon_id" AS "Target__ncbi_taxon_id", "Target"."gene_name" AS "Target__gene_name", "Target"."common_name" AS "Target__common_name", "Target"."ncbi_coded_by_region" AS "Target__ncbi_coded_by_region", "Target"."ncbi_note" AS "Target__ncbi_note", "Target"."tigr_main_role_id" AS "Target__tigr_main_role_id", "Target"."tigr_sub_role_id" AS "Target__tigr_sub_role_id", "Target"."comment" AS "Target__comment", "Target"."justification" AS "Target__justification", "Target"."sequence" AS "Target__sequence", "Target"."sequence_length" AS "Target__sequence_length", "Target"."dna_sequence" AS "Target__dna_sequence", "Target"."dna_sequence_ncbi" AS "Target__dna_sequence_ncbi", "Target"."priority" AS "Target__priority", "Target"."project" AS "Target__project", "Target"."selection_phase" AS "Target__selection_phase", "Target"."date_selected" AS "Target__date_selected", "Target"."date_approved" AS "Target__date_approved", "Target"."completion_code" AS "Target__completion_code", "Target"."pi" AS "Target__pi", "Target"."tms" AS "Target__tms", "Target"."sp" AS "Target__sp", "Target"."core_genome" AS "Target__core_genome", "Target"."gram_minus_gene_homolog" AS "Target__gram_minus_gene_homolog", "Target"."gram_plus_gene_homolog" AS "Target__gram_plus_gene_homolog", "Target"."protease_motifs" AS "Target__protease_motifs", "Target"."glycosyl_group_metabolism" AS "Target__glycosyl_group_metabolism", "Target"."study_id" AS "Target__study_id", "Target"."drug_target_homologs" AS "Target__drug_target_homologs", "Target"."virulence_genes" AS "Target__virulence_genes", "Target"."essential_genes_homologs" AS "Target__essential_genes_homologs", "Target"."dna_binding_motifs" AS "Target__dna_binding_motifs", "Target"."inserted" AS "Target__inserted", "Target"."updated" AS "Target__updated", "Target"."species_taxon_id" AS "Target__species_taxon_id", "Target"."ins_user_id" AS "Target__ins_user_id", "Target"."upd_user_id" AS "Target__upd_user_id", "Target"."stage" AS "Target__stage", "Target"."hidden" AS "Target__hidden", "Target"."submitter_id" AS "Target__submitter_id", "Target"."selection_db_id" AS "Target__selection_db_id", "Target"."dna_source_taxon_id" AS "Target__dna_source_taxon_id", "Target"."batch" AS "Target__batch", "Target"."genus_taxon_id" AS "Target__genus_taxon_id", "Target"."seguid" AS "Target__seguid", "Target"."uniprot_id" AS "Target__uniprot_id", "Target"."ec" AS "Target__ec", "Target"."target_family" AS "Target__target_family", "Target"."tar_designpool_id" AS "Target__tar_designpool_id", "Target"."community_nominated" AS "Target__community_nominated", "Target"."partnership_nominated" AS "Target__partnership_nominated", "Target"."biomedical" AS "Target__biomedical", "Target"."metagenomic" AS "Target__metagenomic", "Target"."structural_coverage" AS "Target__structural_coverage", "Target"."psi2" AS "Target__psi2", "Target"."legacy" AS "Target__legacy", "Target"."complex_with_biological_partner" AS "Target__complex_with_biological_partner", "Target"."functional_mutant" AS "Target__functional_mutant", "Target"."conformational_state" AS "Target__conformational_state", "Target"."disease" AS "Target__disease", "Target"."individual_organism" AS "Target__individual_organism", "Target"."protein_family_of_high_biological_importance" AS "Target__protein_family_of_high_biological_importance", "Target"."general_domain_family" AS "Target__general_domain_family", "Target"."eukaryotic_domain_family" AS "Target__eukaryotic_domain_family", "Target"."first_structure_of_class" AS "Target__first_structure_of_class", "Target"."functional_follow_up" AS "Target__functional_follow_up", "Target"."technology_development" AS "Target__technology_development", "Target"."membrane_protein" AS "Target__membrane_protein", "Target"."translated_dna_sequence" AS "Target__translated_dna_sequence", "Target"."family_coverage" AS "Target__family_coverage", "Target"."family_coverage_date" AS "Target__family_coverage_date", "Target"."distribution_lab" AS "Target__distribution_lab", "Target"."uniprot_accession" AS "Target__uniprot_accession", "Target"."protocol_id" AS "Target__protocol_id", "Target"."ensembl_protein_id" AS "Target__ensembl_protein_id", "Target"."ensembl_gene_id" AS "Target__ensembl_gene_id", "Target"."type" AS "Target__type", "Target"."ligand_studies" AS "Target__ligand_studies", "Target"."protein_production_for_partnerships" AS "Target__protein_production_for_partnerships", "Target"."single_domain_protein" AS "Target__single_domain_protein", "Target"."multidomain_protein" AS "Target__multidomain_protein", "Target"."oligomeric_protein" AS "Target__oligomeric_protein", "Target"."eukaryotic_protein" AS "Target__eukaryotic_protein", "Target"."protein_protein_complex" AS "Target__protein_protein_complex", "Target"."protein_nucleic_acid_complex" AS "Target__protein_nucleic_acid_complex", "Target"."protein_ligand_complex" AS "Target__protein_ligand_complex", "Target"."de_novo_designed_protein" AS "Target__de_novo_designed_protein", "Target"."post_translational_modification" AS "Target__post_translational_modification", "Project"."protein_target_id" AS "Project__protein_target_id", "Project"."pdb_id" AS "Project__pdb_id", "Project"."chain_id" AS "Project__chain_id", "Project"."sequence_identity" AS "Project__sequence_identity", "Project"."organism" AS "Project__organism", "Organism"."tax_id" AS "Organism__tax_id", "Organism"."name_text" AS "Organism__name_text", "Organism"."unique_name" AS "Organism__unique_name", "Organism"."name_class" AS "Organism__name_class", "Species"."tax_id" AS "Species__tax_id", "Species"."name_text" AS "Species__name_text", "Species"."unique_name" AS "Species__unique_name", "Species"."name_class" AS "Species__name_class", "Stage"."sequence" AS "Stage__sequence", "Stage"."name" AS "Stage__name", "ProteinPdbHomolog"."protein_target_id" AS "ProteinPdbHomolog__protein_target_id", "ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id", "ProteinPdbHomolog"."chain_id" AS "ProteinPdbHomolog__chain_id", "ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity", "ProteinPdbHomolog"."organism" AS "ProteinPdbHomolog__organism", "RequestTarget"."id" AS "RequestTarget__id", "RequestTarget"."gi" AS "RequestTarget__gi", "RequestTarget"."ncbi_accver" AS "RequestTarget__ncbi_accver", "RequestTarget"."sequence" AS "RequestTarget__sequence", "RequestTarget"."ncbi_taxon_id" AS "RequestTarget__ncbi_taxon_id", "RequestTarget"."organism" AS "RequestTarget__organism", "RequestTarget"."comment" AS "RequestTarget__comment", "RequestTarget"."person_id" AS "RequestTarget__person_id", "RequestTarget"."justification" AS "RequestTarget__justification", "RequestTarget"."resources" AS "RequestTarget__resources", "RequestTarget"."agreement_clicked" AS "RequestTarget__agreement_clicked", "RequestTarget"."approved" AS "RequestTarget__approved", "RequestTarget"."target_id" AS "RequestTarget__target_id", "RequestTarget"."inserted" AS "RequestTarget__inserted", "RequestTarget"."updated" AS "RequestTarget__updated", "RequestTarget"."dna_sequence" AS "RequestTarget__dna_sequence", "RequestTarget"."dna_source" AS "RequestTarget__dna_source", "RequestTarget"."dna_source_taxon_id" AS "RequestTarget__dna_source_taxon_id", "RequestTarget"."center" AS "RequestTarget__center", "RequestTarget"."community_interest" AS "RequestTarget__community_interest", "TargetPlanning"."id" AS "TargetPlanning__id", "TargetPlanning"."target_id" AS "TargetPlanning__target_id", "TargetPlanning"."source_file" AS "TargetPlanning__source_file", "TargetPlanning"."target_type" AS "TargetPlanning__target_type", "TargetPlanning"."genomic_dna_source" AS "TargetPlanning__genomic_dna_source", "TargetPlanning"."genomic_dna_status" AS "TargetPlanning__genomic_dna_status", "TargetPlanning"."notes1" AS "TargetPlanning__notes1", "TargetPlanning"."id1" AS "TargetPlanning__id1", "TargetPlanning"."notes2" AS "TargetPlanning__notes2", "TargetPlanning"."id2" AS "TargetPlanning__id2", "TargetPlanning"."ortholog_rescue" AS "TargetPlanning__ortholog_rescue", "TargetPlanning"."codon_optimization" AS "TargetPlanning__codon_optimization", "TargetPlanning"."should_solve_structure" AS "TargetPlanning__should_solve_structure", "TargetPlanning"."inserted" AS "TargetPlanning__inserted", "TargetPlanning"."updated" AS "TargetPlanning__updated", "TargetPlanning"."operon_colocalization" AS "TargetPlanning__operon_colocalization" FROM "protein_target" AS "Target" LEFT JOIN "protein_pdb_homolog_table" AS "Project" ON ("Target"."target_id" = "Project"."protein_target_id") LEFT JOIN "names" AS "Organism" ON ("Target"."ncbi_taxon_id" = "Organism"."tax_id" AND "Organism"."name_class" = 'scientific name') LEFT JOIN "names" AS "Species" ON ("Target"."species_taxon_id" = "Species"."tax_id" AND "Species"."name_class" = 'scientific name') LEFT JOIN "stage" AS "Stage" ON ("Target"."stage" = "Stage"."name") LEFT JOIN "protein_pdb_homolog_table" AS "ProteinPdbHomolog" ON ("ProteinPdbHomolog"."protein_target_id" = "Target"."target_id") LEFT JOIN "request_target" AS "RequestTarget" ON ("RequestTarget"."target_id" = "Target"."target_id") LEFT JOIN "target_planning" AS "TargetPlanning" ON ("TargetPlanning"."target_id" = "Target"."target_id") WHERE "Target"."target_id" = '016735' LIMIT 1" $resultSet = array( array( "Target" => array(), "Project" => array(), "Organism" => array(), "Species" => array(), "Stage" => array(), "ProteinPdbHomolog" => array(), "RequestTarget" => array(), "TargetPlanning" => array(), "SubTarget" => array() ) ) $filtered = array( "Project", "Organism", "Species", "Stage", "ProteinPdbHomolog", "RequestTarget", "TargetPlanning", "SubTarget" ) $stack = array( "SubTarget" )DboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 844 Model::find() - CORE/cake/libs/model/model.php, line 2153 DboSource::query() - CORE/cake/libs/model/datasources/dbo_source.php, line 350 Model::call__() - CORE/cake/libs/model/model.php, line 511 Overloadable::__call() - CORE/cake/libs/overloadable_php5.php, line 50 Target::findByTargetId() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_Target::findById() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_ActionsHelper::create() - /var/www/unitrack/views/helpers/unitrack_actions.php, line 309 include - APP/views/layouts/default.ctp, line 81 View::_render() - CORE/cake/libs/view/view.php, line 736 View::renderLayout() - CORE/cake/libs/view/view.php, line 494 View::render() - CORE/cake/libs/view/view.php, line 440 Controller::render() - CORE/cake/libs/controller/controller.php, line 909 ErrorHandler::_outputMessage() - CORE/cake/libs/error.php, line 458 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 261 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112 ErrorHandler::__construct() - CORE/cake/libs/error.php, line 125 Object::cakeError() - CORE/cake/libs/object.php, line 201
Fatal Error (256): ConnectionManager::getDataSource - Non-existent data source [CORE/cake/libs/model/connection_manager.php, line 102]Code | Context$db =& $this;
} else {
$db =& ConnectionManager::getDataSource($linkModel->useDbConfig);
$name = null $_this = ConnectionManager ConnectionManager::$config = DATABASE_CONFIG object ConnectionManager::$_dataSources = array ConnectionManager::$_connectionsEnum = arrayConnectionManager::getDataSource() - CORE/cake/libs/model/connection_manager.php, line 102 DboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 844 Model::find() - CORE/cake/libs/model/model.php, line 2153 DboSource::query() - CORE/cake/libs/model/datasources/dbo_source.php, line 350 Model::call__() - CORE/cake/libs/model/model.php, line 511 Overloadable::__call() - CORE/cake/libs/overloadable_php5.php, line 50 Target::findByTargetId() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_Target::findById() - /var/www/unitrack/models/unitrack_target.php, line 213 Unitrack_ActionsHelper::create() - /var/www/unitrack/views/helpers/unitrack_actions.php, line 309 include - APP/views/layouts/default.ctp, line 81 View::_render() - CORE/cake/libs/view/view.php, line 736 View::renderLayout() - CORE/cake/libs/view/view.php, line 494 View::render() - CORE/cake/libs/view/view.php, line 440 Controller::render() - CORE/cake/libs/controller/controller.php, line 909 ErrorHandler::_outputMessage() - CORE/cake/libs/error.php, line 458 ErrorHandler::missingTable() - CORE/cake/libs/error.php, line 261 Object::dispatchMethod() - CORE/cake/libs/object.php, line 112