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Code | Context
            $json = $this->create_JSON($id, '___');
        } else {
            $json = $this->create_JSON($target_id, '___');
$target_id	=	"029295"
$split	=	"___"
$target	=	array(
	"Target" => array(
	"id" => "31492",
	"target_id" => "029295",
	"local_target_id" => "029295",
	"locus_tag" => "KLLA0C16621g",
	"ncbi_gi" => "50305965",
	"ncbi_accession" => "XP_452943.1",
	"ncbi_geneid" => "2891987",
	"ncbi_taxon_id" => "284590",
	"gene_name" => null,
	"common_name" => "hypothetical protein [Kluyveromyces lactis NRRL Y-1140]",
	"ncbi_coded_by_region" => "XM_452943.1:1..921",
	"ncbi_note" => null,
	"tigr_main_role_id" => null,
	"tigr_sub_role_id" => null,
	"comment" => null,
	"justification" => null,
	"sequence" => "MSSLDINEQRALIKSAHRYISEKLEDHFSSEFLPKALVICGSGLSGISTKIADEPKPLILSYSTIPGFKVSTVPGHSGELIFGYMNGAPVVLMNGRLHSYEGHSLAETVHPIRALHLLGSINVLIVTNAAGGINASFKAGDLMCVYDHINFPGLCGFHPLRGANFDEFGPRFLATSDAYDLELRKLLFSKKKELNIERKIHEGTYSYVHGPTFESRAESRFLRLAGTDAVGMSTVPEVVTARHCGWRVLALSLITNECVVDPPASAHDENPVPIQEGKATHEEVLENSAKASKDVQELIFSVVAEI",
	"sequence_length" => "306",
	"dna_sequence" => "ATGTCCTCACTTGACATCAATGAGCAACGTGCTCTTATAAAGTCTGCTCACAGATACATCTCAGAGAAACTCGAGGATCACTTCTCATCCGAGTTTTTACCAAAGGCTCTTGTGATTTGTGGATCTGGTTTAAGTGGAATCTCAACCAAGATCGCTGATGAACCAAAGCCATTGATTCTGTCTTATTCGACCATTCCTGGCTTCAAAGTCAGCACCGTACCTGGACATAGTGGTGAGTTGATCTTTGGCTACATGAACGGTGCGCCTGTCGTCTTAATGAATGGCCGTTTGCATTCTTATGAGGGCCATTCCTTAGCAGAAACAGTGCATCCTATCCGTGCATTGCACTTGTTGGGGTCAATCAATGTCTTGATCGTAACAAATGCAGCCGGTGGTATCAATGCCTCCTTTAAGGCTGGGGATTTAATGTGTGTCTACGACCATATCAATTTCCCAGGATTATGCGGGTTCCATCCTCTAAGGGGAGCTAATTTTGACGAATTTGGGCCAAGATTCTTGGCTACCAGTGATGCTTATGACTTGGAACTACGTAAGCTATTGTTTTCAAAGAAAAAAGAGCTCAATATCGAAAGAAAGATCCATGAGGGTACCTACTCATACGTTCATGGTCCTACCTTCGAAAGCAGAGCTGAATCACGTTTCTTGAGATTGGCTGGTACAGATGCTGTGGGAATGAGTACTGTTCCTGAGGTTGTTACTGCTAGACATTGTGGCTGGAGAGTACTTGCCTTATCCTTAATCACAAATGAATGTGTCGTTGATCCTCCAGCCAGTGCTCATGATGAAAATCCGGTACCAATTCAAGAAGGAAAGGCTACACATGAGGAAGTGCTCGAAAATAGTGCCAAAGCATCAAAAGATGTTCAGGAATTAATCTTTTCCGTAGTTGCGGAGATATAA",
	"dna_sequence_ncbi" => null,
	"priority" => "1",
	"project" => "COM:SEN (Schramm's ENzymes)",
	"selection_phase" => null,
	"date_selected" => "2012-09-10",
	"date_approved" => "2012-09-10",
	"completion_code" => null,
	"pi" => null,
	"tms" => null,
	"sp" => null,
	"core_genome" => null,
	"gram_minus_gene_homolog" => null,
	"gram_plus_gene_homolog" => null,
	"protease_motifs" => null,
	"glycosyl_group_metabolism" => null,
	"study_id" => null,
	"drug_target_homologs" => null,
	"virulence_genes" => null,
	"essential_genes_homologs" => null,
	"dna_binding_motifs" => null,
	"inserted" => "2012-09-10 21:06:06.52557+00",
	"updated" => "2012-09-10 21:06:06.52557+00",
	"species_taxon_id" => "28985",
	"ins_user_id" => "2",
	"upd_user_id" => null,
	"stage" => "crystallized",
	"hidden" => false,
	"submitter_id" => null,
	"selection_db_id" => null,
	"dna_source_taxon_id" => null,
	"batch" => "schramm_corr",
	"genus_taxon_id" => "4910",
	"seguid" => null,
	"uniprot_id" => null,
	"ec" => null,
	"target_family" => null,
	"tar_designpool_id" => null,
	"community_nominated" => true,
	"partnership_nominated" => null,
	"biomedical" => false,
	"metagenomic" => false,
	"structural_coverage" => false,
	"psi2" => false,
	"legacy" => false,
	"complex_with_biological_partner" => false,
	"functional_mutant" => false,
	"conformational_state" => false,
	"disease" => false,
	"individual_organism" => false,
	"protein_family_of_high_biological_importance" => false,
	"general_domain_family" => false,
	"eukaryotic_domain_family" => false,
	"first_structure_of_class" => false,
	"functional_follow_up" => false,
	"technology_development" => false,
	"membrane_protein" => false,
	"translated_dna_sequence" => "MSSLDINEQRALIKSAHRYISEKLEDHFSSEFLPKALVICGSGLSGISTKIADEPKPLILSYSTIPGFKVSTVPGHSGELIFGYMNGAPVVLMNGRLHSYEGHSLAETVHPIRALHLLGSINVLIVTNAAGGINASFKAGDLMCVYDHINFPGLCGFHPLRGANFDEFGPRFLATSDAYDLELRKLLFSKKKELNIERKIHEGTYSYVHGPTFESRAESRFLRLAGTDAVGMSTVPEVVTARHCGWRVLALSLITNECVVDPPASAHDENPVPIQEGKATHEEVLENSAKASKDVQELIFSVVAEI*",
	"family_coverage" => null,
	"family_coverage_date" => null,
	"distribution_lab" => null,
	"uniprot_accession" => null,
	"protocol_id" => "Target_selection",
	"ensembl_protein_id" => null,
	"ensembl_gene_id" => null,
	"type" => "single protein",
	"ligand_studies" => false,
	"protein_production_for_partnerships" => false,
	"single_domain_protein" => false,
	"multidomain_protein" => false,
	"oligomeric_protein" => false,
	"eukaryotic_protein" => false,
	"protein_protein_complex" => false,
	"protein_nucleic_acid_complex" => false,
	"protein_ligand_complex" => false,
	"de_novo_designed_protein" => false,
	"post_translational_modification" => false
),
	"ProteinClone" => array(
	array(),
	array(),
	array(),
	array()
)
)
$filteredLabs	=	array(
	"UVA",
	"NU",
	"UT",
	"WU"
)
$highlighted	=	array()
$paths	=	array(
	array(
	"Target___029295"
),
	array(
	"Target___029295",
	"ProteinClone___72014"
),
	array(
	"Target___029295",
	"ProteinClone___72014",
	"Expression___26196"
)
)
$tips	=	array(
	"Target___029295" => array(
	"title" => "Target 029295",
	"text" => "hypothetical protein [Kluyveromyces lactis NRRL Y-1140]"
),
	"ProteinClone___72014" => array(
	"title" => "Clone",
	"text" => "sequence range: 0-0<br>vector: pSGC-His<br>person: Mark Stead"
),
	"Expression___26196" => array(
	"title" => "Expression",
	"text" => "expression level: 66.7%<br>solubility level: 66.7%<br>media: PASM-SeMet (2000mL)<br>induction: IPTG (37&deg;C)<br>person: Brandan Hillerich"
),
	"Purification___3884" => array(
	"title" => "Purification",
	"text" => "final concentration: 4.73mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Muftah Ahmed"
)
)
$root	=	array(
	"id" => "Target___029295",
	"name" => "T  029295",
	"data" => array()
)
$clones	=	array()
$sclone	=	array(
	"id" => "72014",
	"target_id" => "029295",
	"clone_suffix" => "30398",
	"sequence_start" => "0",
	"sequence_end" => "0",
	"sequence" => "SSLDINEQRALIKSAHRYISEKLEDHFSSEFLPKALVICGSGLSGISTKIADEPKPLILSYSTIPGFKVSTVPGHSGELIFGYMNGAPVVLMNGRLHSYEGHSLAETVHPIRALHLLGSINVLIVTNAAGGINASFKAGDLMCVYDHINFPGLCGFHPLRGANFDEFGPRFLATSDAYDLELRKLLFSKKKELNIERKIHEGTYSYVHGPTFESRAESRFLRLAGTDAVGMSTVPEVVTARHCGWRVLALSLITNECVVDPPASAHDENPVPIQEGKATHEEVLENSAKASKDVQELIFSVVAEI",
	"sequence_comments" => null,
	"local_protein_target_id" => "32969",
	"local_clone_plate_id" => null,
	"local_clone_id" => "30398",
	"experiment_date_start" => "2012-11-29",
	"experiment_date_end" => "2012-11-29",
	"staff_id" => "430",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Ligation Independent Cloning",
	"status" => "success",
	"vector" => "pSGC-His",
	"pcr_primer_forward" => "TACTTCCAATCCATGTCCTCACTTGACATCAATGAGCAAC",
	"pcr_primer_backward" => "TATCCACCTTTACTGTTATATCTCCGCAACTACGGAAAAGATTAATTC",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2012-11-29 17:00:56.985931+00",
	"ins_user_id" => null,
	"update" => "2014-05-20 02:05:08.326614+00",
	"upd_user_id" => "1",
	"secondary_shipped_to_lab_id" => null,
	"secondary_shipped_date" => null,
	"external_source" => false,
	"mutation" => null,
	"bei_available" => false,
	"bei_number" => null,
	"reference_sequence_variance" => null,
	"confirmed_dna_sequence" => null,
	"confirmed_protein_sequence" => null,
	"present_in_lims" => false,
	"template_dna_sequence" => "TCCTCACTTGACATCAATGAGCAACGTGCTCTTATAAAGTCTGCTCACAGATACATCTCAGAGAAACTCGAGGATCACTTCTCATCCGAGTTTTTACCAAAGGCTCTTGTGATTTGTGGATCTGGTTTAAGTGGAATCTCAACCAAGATCGCTGATGAACCAAAGCCATTGATTCTGTCTTATTCGACCATTCCTGGCTTCAAAGTCAGCACCGTACCTGGACATAGTGGTGAGTTGATCTTTGGCTACATGAACGGTGCGCCTGTCGTCTTAATGAATGGCCGTTTGCATTCTTATGAGGGCCATTCCTTAGCAGAAACAGTGCATCCTATCCGTGCATTGCACTTGTTGGGGTCAATCAATGTCTTGATCGTAACAAATGCAGCCGGTGGTATCAATGCCTCCTTTAAGGCTGGGGATTTAATGTGTGTCTACGACCATATCAATTTCCCAGGATTATGCGGGTTCCATCCTCTAAGGGGAGCTAATTTTGACGAATTTGGGCCAAGATTCTTGGCTACCAGTGATGCTTATGACTTGGAACTACGTAAGCTATTGTTTTCAAAGAAAAAAGAGCTCAATATCGAAAGAAAGATCCATGAGGGTACCTACTCATACGTTCATGGTCCTACCTTCGAAAGCAGAGCTGAATCACGTTTCTTGAGATTGGCTGGTACAGATGCTGTGGGAATGAGTACTGTTCCTGAGGTTGTTACTGCTAGACATTGTGGCTGGAGAGTACTTGCCTTATCCTTAATCACAAATGAATGTGTCGTTGATCCTCCAGCCAGTGCTCATGATGAAAATCCGGTACCAATTCAAGAAGGAAAGGCTACACATGAGGAAGTGCTCGAAAATAGTGCCAAAGCATCAAAAGATGTTCAGGAATTAATCTTTTCCGTAGTTGCGGAGATA",
	"lims_date" => "2012-11-29",
	"dummy" => false,
	"type" => null,
	"clone_annotation" => null,
	"optimized_dna_sequence" => null,
	"optimized" => false,
	"truncated" => false,
	"synthetic" => false,
	"Staff" => array(
	"id" => "430",
	"first_name" => "Mark",
	"last_name" => "Stead",
	"email" => "mark.stead@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2012-02-28 22:00:05.514568+00",
	"updated" => "2012-02-28 22:00:05.514568+00",
	"institution_id" => null,
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "430"
),
	"Expression" => array(
	array(),
	array()
)
)
$iclone	=	array(
	"id" => "ProteinClone___72014",
	"name" => "C  .11/29/12",
	"data" => array(),
	"children" => array()
)
$sexpr	=	array(
	"id" => "26196",
	"target_id" => "029295",
	"expression_suffix" => "36103",
	"clone_id" => "72014",
	"clone_suffix" => "30398",
	"local_clone_id" => "30398",
	"local_protein_target_id" => "32969",
	"local_expression_id" => "36103",
	"experiment_date_start" => "2012-12-07",
	"experiment_date_end" => "2012-12-07",
	"staff_id" => "23",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "LEX48 PASM-5052 Large Scale Expression",
	"status" => "success",
	"expression_organism" => "E. coli",
	"expression_strain" => "BL21 DE3 RIL",
	"media_type" => "PASM-SeMet",
	"media_volume" => "2000",
	"growth_temperature" => "37",
	"induction_temperature" => "37",
	"induction_reagent" => "IPTG",
	"experiment_type" => "production",
	"expression_level" => "66.6667",
	"solubility_level" => "66.6667",
	"inserted" => "2012-12-18 17:01:03.328925+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:22:03.17088+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2012-12-18",
	"dummy" => false,
	"Staff" => array(
	"id" => "23",
	"first_name" => "Brandan",
	"last_name" => "Hillerich",
	"email" => "brandan.hillerich@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-11-16 22:19:15.566353+00",
	"updated" => "2010-11-16 22:19:15.566353+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "23"
),
	"Purification" => array(
	array()
)
)
$iexpr	=	array(
	"id" => "Expression___26196",
	"name" => "E  .12/07/12",
	"data" => array(),
	"children" => array()
)
$expression_level	=	"66.7%"
$solubility_level	=	"66.7%"
$spur	=	array(
	"id" => "3884",
	"target_id" => "029295",
	"purification_suffix" => "4615",
	"expression_id" => "26196",
	"local_expression_id" => "36103",
	"local_protein_target_id" => "32969",
	"local_purification_id" => "4615",
	"experiment_date_start" => "2012-12-17",
	"experiment_date_end" => "2012-12-18",
	"staff_id" => "1825",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Large-Scale Automated Protein Purification",
	"status" => "success",
	"description" => null,
	"affinity_tag_status" => "na",
	"semet_status" => "native",
	"covalent_modification" => null,
	"final_buffer" => null,
	"final_concentration" => "4.73",
	"final_volume" => "11910",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2013-01-02 17:00:26.261277+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:29:29.29601+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2013-01-02",
	"dummy" => false,
	"yield" => null,
	"Staff" => array(
	"id" => "1825",
	"first_name" => "Muftah",
	"last_name" => "Ahmed",
	"email" => "muftah.ahmed@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
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	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2012-06-22 21:00:37.397023+00",
	"updated" => "2012-06-22 21:00:37.397023+00",
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	"Hsqc" => array()
)
$ipur	=	array(
	"id" => "Purification___3884",
	"name" => "P  .12/17/12"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

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