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Code | Context
            $json = $this->create_JSON($id, '___');
        } else {
            $json = $this->create_JSON($target_id, '___');
$target_id	=	"200456"
$split	=	"___"
$target	=	array(
	"Target" => array(
	"id" => "11276",
	"target_id" => "200456",
	"local_target_id" => "200456",
	"locus_tag" => "XCC2270",
	"ncbi_gi" => "21231708",
	"ncbi_accession" => "NP_637625.1",
	"ncbi_geneid" => "1002091",
	"ncbi_taxon_id" => "190485",
	"gene_name" => null,
	"common_name" => "N-ethylammeline chlorohydrolase [Xanthomonas campestris pv. campestris str. ATCC 33913]",
	"ncbi_coded_by_region" => "complement(NC_003902.1:2670382..2671731)",
	"ncbi_note" => "Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline",
	"tigr_main_role_id" => null,
	"tigr_sub_role_id" => null,
	"comment" => null,
	"justification" => "Community target program on mechanistically diverse enzyme superfamilies",
	"sequence" => "MDPLMTNAPPEPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYFFADVQAAVYKQHGFRALVGAVIIDFPTAWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQYGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAKAVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELIDMDTAALVANARQWRDRIRTVRA",
	"sequence_length" => "449",
	"dna_sequence" => "TCAGGCGCGGACGGTGCGGATACGGTCGCGCCACTGGCGCGCGTTGGCGACCAGGGCAGCGGTATCCATGTCGATGAGCTCGCGTTGCACCAGCTTGGGCTTGCCGGCGATCCACACATCGGTCACCTGGTGGCGGCCGGCGGCATAGATCAGCTGCGACAACACGTGATGCAGCGGCTGGGTTTCCAGCGCGGACAGATCCACGCAAACCAGGTCGGCCTGCTTGCCCACCTCGATCGAGCCGATGCGGTCGCCAAAGCCGAGTGCGCGTGCGCCCCCCAAGGTGGCGGCGCGCAAGGTGGTGGCCGCATCCAGCGCGGTGGCATCGTTGGCCACTGCCTTGGCCAGGATCGCCGCGGTGCGGTTCTCGCTGAACATGTCCAGGTCATTGTTGCTGGCGCAGCCGTCGGTGCCGATCGCCAGATTCACGCTGGCGCGTTGCAGCGCGCACGCCGGGCAAAAGCCCGAGGCCAGCTTGAGATTGGATTCGGGGCAGTGCACCACGCTGACACCGCGCTCGGCGCACAGGTGGATTTCGGCCTCGGTGAGCTGGGTCATGTGCACCGCAATCAGGCGGTCGTTGACCAGGCCCAGACGATCCAGCCGTGCCAGCGGGCGCTGGCCATACTGCGCCACCGAATCAGCCACTTCCTGCGCGGTTTCGTGCGTGTGCAGATGCACCGGCATGTCCAGCTGGTCGGCCAGCATGCGTACGCGCTCGAAGTTGGCATCGTTCACCGTGTACGGCGCATGCGGTGCAAACGCGGTGCTGATCAGCGGGTCGTCGCGCCACTGGTCGTGCAGCTCGCCGGCACGTGCGAAGTATTCGTCGTCCGACGAGGCCCAGGCGGTGGGGAAATCGATGATCACCGCGCCCACCAGCGCACGGAAGCCATGCTGCTTGTAGACGGCCGCCTGCACGTCGGCAAAGAAGTAGTTCTCGTTGACGCAGGTGGTGCCGCCGCGCAGCATCTCGGCGATCGCCAGGGTGGTGCCATCGGCGACGAATTCCGGGCCGATCACTGCCGCTTCCACCGGCCAGATGTGCTGCTGCAGCCACACCATCAGCGGCAGATCGTCGGCCACGCCGCGCAGCAGCGTCATCGGGTTGTGCGTGTGCGCGTTGACCAGGCCGGGCATCAGCGCCGCGTCGGGGCGCGACACGGTGCGTGCCGGCGCGAAACGCACGCGTGCGTCGGCCGTTGGCAGCACGGCAACGATGACACCGTTGCTGACCGCCACCGCGTGGTCTTCAAGCACCACCGCATGCGGTTCGATCGGCACCACATAGCCGGCCTCGATCAGCAGGTCGCAGGGTTCGGGCGGGGCGTTGGTCATGAGCGGATCCAT",
	"dna_sequence_ncbi" => null,
	"priority" => "1",
	"project" => "COM (Community Requests)",
	"selection_phase" => null,
	"date_selected" => "2011-03-21",
	"date_approved" => "2011-03-21",
	"completion_code" => null,
	"pi" => null,
	"tms" => null,
	"sp" => null,
	"core_genome" => null,
	"gram_minus_gene_homolog" => null,
	"gram_plus_gene_homolog" => null,
	"protease_motifs" => null,
	"glycosyl_group_metabolism" => null,
	"study_id" => null,
	"drug_target_homologs" => null,
	"virulence_genes" => null,
	"essential_genes_homologs" => null,
	"dna_binding_motifs" => null,
	"inserted" => "2011-03-21 20:18:19.331041+00",
	"updated" => "2011-03-21 20:18:19.331041+00",
	"species_taxon_id" => "339",
	"ins_user_id" => "2",
	"upd_user_id" => null,
	"stage" => "in_pdb",
	"hidden" => false,
	"submitter_id" => null,
	"selection_db_id" => null,
	"dna_source_taxon_id" => null,
	"batch" => "AH targets moved from EFI",
	"genus_taxon_id" => "338",
	"seguid" => null,
	"uniprot_id" => null,
	"ec" => null,
	"target_family" => null,
	"tar_designpool_id" => null,
	"community_nominated" => true,
	"partnership_nominated" => null,
	"biomedical" => false,
	"metagenomic" => false,
	"structural_coverage" => false,
	"psi2" => false,
	"legacy" => false,
	"complex_with_biological_partner" => false,
	"functional_mutant" => false,
	"conformational_state" => false,
	"disease" => false,
	"individual_organism" => false,
	"protein_family_of_high_biological_importance" => false,
	"general_domain_family" => false,
	"eukaryotic_domain_family" => false,
	"first_structure_of_class" => false,
	"functional_follow_up" => false,
	"technology_development" => false,
	"membrane_protein" => false,
	"translated_dna_sequence" => "SGADGADTVAPLARVGDQGSGIHVDELALHQLGLAGDPHIGHLVAAGGIDQLRQHVMQRLGFQRGQIHANQVGLLAHLDRADAVAKAECACAPQGGGAQGGGRIQRGGIVGHCLGQDRRGAVLAEHVQVIVAGAAVGADRQIHAGALQRARRAKARGQLEIGFGAVHHADTALGAQVDFGLGELGHVHRNQAVVDQAQTIQPCQRALAILRHRISHFLRGFVRVQMHRHVQLVGQHAYALEVGIVHRVRRMRCKRGADQRVVAPLVVQLAGTCEVFVVRRGPGGGEIDDHRAHQRTEAMLLVDGRLHVGKEVVLVDAGGAAAQHLGDRQGGAIGDEFRADHCRFHRPDVLLQPHHQRQIVGHAAQQRHRVVRVRVDQAGHQRRVGARHGACRRETHACVGRWQHGNDDTVADRHRVVFKHHRMRFDRHHIAGLDQQVAGFGRGVGHERIH",
	"family_coverage" => "10932",
	"family_coverage_date" => "2013-08-23",
	"distribution_lab" => null,
	"uniprot_accession" => null,
	"protocol_id" => "Target_selection",
	"ensembl_protein_id" => null,
	"ensembl_gene_id" => null,
	"type" => "single protein",
	"ligand_studies" => false,
	"protein_production_for_partnerships" => false,
	"single_domain_protein" => false,
	"multidomain_protein" => false,
	"oligomeric_protein" => false,
	"eukaryotic_protein" => false,
	"protein_protein_complex" => false,
	"protein_nucleic_acid_complex" => false,
	"protein_ligand_complex" => false,
	"de_novo_designed_protein" => false,
	"post_translational_modification" => false
),
	"ProteinClone" => array(
	array()
)
)
$filteredLabs	=	array(
	"UVA",
	"NU",
	"UT",
	"WU"
)
$highlighted	=	array()
$paths	=	array(
	array(
	"Target___200456"
),
	array(
	"Target___200456",
	"ProteinClone___29146"
),
	array(
	"Target___200456",
	"ProteinClone___29146",
	"Expression___5092"
)
)
$tips	=	array(
	"Target___200456" => array(
	"title" => "Target 200456",
	"text" => "N-ethylammeline chlorohydrolase [Xanthomonas campestris pv. campestris str. ATCC 33913]"
),
	"ProteinClone___29146" => array(
	"title" => "Clone",
	"text" => "sequence range: 0-0<br>vector: CHS30<br>person: Brandan Hillerich"
),
	"Expression___5092" => array(
	"title" => "Expression",
	"text" => "expression level: 100.0%<br>solubility level: 66.7%<br>media: Studier/Fox Autoinduction (2000mL)<br>induction: Autoinduction (25&deg;C)<br>person: Matthew Vetting"
),
	"Purification___940" => array(
	"title" => "Purification",
	"text" => "final concentration: 11mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Matthew Vetting"
)
)
$root	=	array(
	"id" => "Target___200456",
	"name" => "T  200456",
	"data" => array()
)
$clones	=	array()
$sclone	=	array(
	"id" => "29146",
	"target_id" => "200456",
	"clone_suffix" => "714",
	"sequence_start" => "0",
	"sequence_end" => "0",
	"sequence" => "DPLMTNAPPEPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYFFADVQAAVYKQHGFRALVGAVIIDFPTAWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQYGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAKAVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELIDMDTAALVANARQWRDRIRTVRA",
	"sequence_comments" => null,
	"local_protein_target_id" => "426",
	"local_clone_plate_id" => null,
	"local_clone_id" => "714",
	"experiment_date_start" => "2010-08-03",
	"experiment_date_end" => "2010-08-05",
	"staff_id" => "23",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "Ligation Independent Cloning",
	"status" => "success",
	"vector" => "CHS30",
	"pcr_primer_forward" => "TTAAGAAGGAGATATACCATGGACCCGCTGATGACGAACGCAC",
	"pcr_primer_backward" => "gattggaagtagaggttctctgcAGCGCGGACGGTGCGGATAC",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2011-03-22 11:00:37.789046+00",
	"ins_user_id" => null,
	"update" => "2014-05-20 02:00:41.854891+00",
	"upd_user_id" => "1",
	"secondary_shipped_to_lab_id" => null,
	"secondary_shipped_date" => null,
	"external_source" => false,
	"mutation" => null,
	"bei_available" => false,
	"bei_number" => null,
	"reference_sequence_variance" => null,
	"confirmed_dna_sequence" => null,
	"confirmed_protein_sequence" => null,
	"present_in_lims" => false,
	"template_dna_sequence" => "GACCCGCTGATGACGAACGCACCGCCGGAACCGTGTGACCTGCTGATTGAAGCTGGCTATGTTGTCCCGATTGAACCGCACGCTGTGGTTCTGGAAGATCATGCAGTCGCTGTGAGTAACGGCGTTATTGTCGCAGTGCTGCCGACCGCAGATGCCCGTGTGCGTTTTGCACCGGCTCGTACGGTTTCCCGCCCGGACGCAGCACTGATGCCGGGTCTGGTGAACGCACATACCCACAATCCGATGACGCTGCTGCGTGGTGTCGCGGATGACCTGCCGCTGATGGTGTGGCTGCAGCAACACATTTGGCCGGTTGAAGCAGCTGTCATCGGCCCGGAATTTGTGGCGGATGGCACCACGCTGGCGATTGCCGAAATGCTGCGTGGCGGCACCACGTGCGTTAACGAAAATTATTTCTTTGCCGATGTGCAGGCGGCCGTTTACAAACAACATGGCTTTCGCGCCCTGGTGGGTGCAGTTATTATCGACTTCCCGACCGCATGGGCTAGCTCTGATGACGAATATTTTGCGCGTGCCGGTGAACTGCACGATCAGTGGCGCGATGACCCGCTGATCAGCACCGCATTTGCTCCGCATGCACCGTACACGGTTAACGACGCTAATTTCGAACGTGTCCGCATGCTGGCGGATCAGCTGGACATGCCGGTGCATCTGCACACCCATGAAACGGCTCAAGAAGTCGCGGATTCTGTGGCACAGTATGGTCAACGTCCGCTGGCACGTCTGGATCGTCTGGGTCTGGTTAATGACCGCCTGATTGCAGTCCACATGACCCAGCTGACGGAAGCGGAAATCCATCTGTGCGCCGAACGTGGCGTTTCAGTGGTTCACTGTCCGGAAAGTAACCTGAAGCTGGCGTCCGGTTTTTGCCCGGCATGTGCACTGCAGCGTGCATCGGTGAATCTGGCTATTGGCACCGATGGTTGCGCCTCAAACAATGATCTGGACATGTTCTCGGAAAACCGTACCGCAGCTATCCTGGCAAAAGCTGTTGCGAATGATGCCACCGCACTGGACGCAGCAACCACGCTGCGTGCAGCTACGCTGGGCGGTGCTCGTGCGCTGGGTTTCGGTGATCGCATTGGCTCAATCGAAGTCGGCAAGCAGGCGGATCTGGTTTGTGTGGATCTGAGCGCCCTGGAAACCCAGCCGCTGCATCACGTGCTGTCTCAACTGATCTACGCGGCCGGCCGTCATCAGGTCACCGATGTGTGGATTGCGGGTAAACCGAAGCTGGTGCAACGCGAACTGATCGATATGGACACCGCCGCACTGGTTGCTAATGCTCGTCAATGGCGTGATCGTATCCGCACCGTCCGCGCT",
	"lims_date" => "2011-03-22",
	"dummy" => false,
	"type" => null,
	"clone_annotation" => null,
	"optimized_dna_sequence" => null,
	"optimized" => false,
	"truncated" => false,
	"synthetic" => false,
	"Staff" => array(
	"id" => "23",
	"first_name" => "Brandan",
	"last_name" => "Hillerich",
	"email" => "brandan.hillerich@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-11-16 22:19:15.566353+00",
	"updated" => "2010-11-16 22:19:15.566353+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "23"
),
	"Expression" => array(
	array(),
	array(),
	array(),
	array(),
	array(),
	array(),
	array()
)
)
$iclone	=	array(
	"id" => "ProteinClone___29146",
	"name" => "C  .08/03/10",
	"data" => array(),
	"children" => array()
)
$sexpr	=	array(
	"id" => "5092",
	"target_id" => "200456",
	"expression_suffix" => "4883",
	"clone_id" => "29146",
	"clone_suffix" => "714",
	"local_clone_id" => "714",
	"local_protein_target_id" => "426",
	"local_expression_id" => "4883",
	"experiment_date_start" => "2011-06-26",
	"experiment_date_end" => "2011-06-27",
	"staff_id" => "209",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "MWV - Autoinduction Shaker",
	"status" => "success",
	"expression_organism" => "E. Coli",
	"expression_strain" => "Rosetta2(plysS)",
	"media_type" => "Studier/Fox Autoinduction",
	"media_volume" => "2000",
	"growth_temperature" => "25",
	"induction_temperature" => "25",
	"induction_reagent" => "Autoinduction",
	"experiment_type" => "production",
	"expression_level" => "100",
	"solubility_level" => "66.6667",
	"inserted" => "2011-09-19 15:03:44.461665+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:14:10.433512+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2011-09-19",
	"dummy" => false,
	"Staff" => array(
	"id" => "209",
	"first_name" => "Matthew",
	"last_name" => "Vetting",
	"email" => "matthew.vetting@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-12-16 00:22:44.542515+00",
	"updated" => "2010-12-16 00:22:44.542515+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "209"
),
	"Purification" => array(
	array()
)
)
$iexpr	=	array(
	"id" => "Expression___5092",
	"name" => "E  .06/26/11",
	"data" => array(),
	"children" => array()
)
$expression_level	=	"100.0%"
$solubility_level	=	"66.7%"
$spur	=	array(
	"id" => "940",
	"target_id" => "200456",
	"purification_suffix" => "891",
	"expression_id" => "5092",
	"local_expression_id" => "4883",
	"local_protein_target_id" => "426",
	"local_purification_id" => "891",
	"experiment_date_start" => "2011-07-02",
	"experiment_date_end" => "2011-07-02",
	"staff_id" => "209",
	"other_people" => null,
	"lab_id" => "AECOM",
	"protocol_id" => "MWV - Large Scale Purification IMAC/GF #2",
	"status" => "success",
	"description" => "Light precipitate after IMAC. Protein does not concentrate well due to precipitate. Protein stored at -80 after IMAC and split to attempt +/- TAG. Cleaved prep failed due to ppt at concentration step prior to SEC (try AmSO4 ppt next time) and binding to IMAC resin even with tag cut off such that subtractive IMAC failed (leave out next time).",
	"affinity_tag_status" => "na",
	"semet_status" => "native",
	"covalent_modification" => null,
	"final_buffer" => "Same as storing buffer",
	"final_concentration" => "11",
	"final_volume" => "77000",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2011-09-19 15:04:16.150577+00",
	"ins_user_id" => null,
	"update" => "2014-05-19 02:28:37.442967+00",
	"upd_user_id" => "1",
	"present_in_lims" => false,
	"lims_date" => "2011-09-19",
	"dummy" => false,
	"yield" => null,
	"Staff" => array(
	"id" => "209",
	"first_name" => "Matthew",
	"last_name" => "Vetting",
	"email" => "matthew.vetting@einstein.yu.edu",
	"phone" => null,
	"lab_id" => "AECOM",
	"responsibility" => null,
	"databases" => false,
	"admin" => false,
	"protein_production" => false,
	"crystallography" => false,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2010-12-16 00:22:44.542515+00",
	"updated" => "2010-12-16 00:22:44.542515+00",
	"institution_id" => "1",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "209"
),
	"CrystallizationDrop" => array(
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	"Hsqc" => array()
)
$ipur	=	array(
	"id" => "Purification___940",
	"name" => "P  .07/02/11"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

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