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Code | Context
            $json = $this->create_JSON($id, '___');
        } else {
            $json = $this->create_JSON($target_id, '___');
$target_id	=	"490002"
$split	=	"___"
$target	=	array(
	"Target" => array(
	"id" => "10026",
	"target_id" => "490002",
	"local_target_id" => "490002",
	"locus_tag" => "G2583_1244",
	"ncbi_gi" => "290761881",
	"ncbi_accession" => "ADD55842.1",
	"ncbi_geneid" => null,
	"ncbi_taxon_id" => "701177",
	"gene_name" => "rutB",
	"common_name" => "Putative synthetase [Escherichia coli O55:H7 str. CB9615]",
	"ncbi_coded_by_region" => "complement(CP001846.1:1297752..1298486)",
	"ncbi_note" => null,
	"tigr_main_role_id" => null,
	"tigr_sub_role_id" => null,
	"comment" => null,
	"justification" => "Functional studies of the proteins involved in the Rut metabolic pathway",
	"sequence" => "MPRPSPCADSGGGMMTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFVQKAALFNIETFFGWVSDVETFCDALSPTSFARIA",
	"sequence_length" => "244",
	"dna_sequence" => "TTAAGCGATACGAGCAAAGGACGTGGGAGAAAGCGCGTCGCAGAACGTTTCGACGTCGCTGACCCAGCCAAAAAAGGTTTCGATATTGAACAACGCGGCTTTCTGTACAAATTCCGGCCCCGCCTGGTGTGTTGCGTCTTCCAGCACCACGCCGAAATACTCCAGAAAAAAGCCATCGCGTAGCGTCGATTCGACGCAGACGTTGGTAGCGATGCCGGTGAAAACCAGATGGCGTATTCCGCGGCTGCGCAAAATGCTGTCCAGCGGCGTATTGAAGAAACCGCTGTAGCGCGGCTTCGGCAGCACAATATCGCCAGGCTGCGGCACCAGTTCATCCACCAGTTGATAATCCCAGGAGCCTTTCGCCAGCAATTTCCCCTGCAGCTGCGGCTGTTTACGCATGGTTTTCAGGGCGTTCGATTTATGAAAATTCGGTGAGCCAGGGCCGCCAGCCTCGACATACTGTTCATCCCAGCCATTTTGAAACCAGATGATCAACATCCCTGCCGCTCGCGCTGCGGTCACGGCGGTTTGAATGTTGGCAATGACCGGGCGAGTGGTTGAGACATCAAACCCGGCGAGATCTAAGTAGCCGCCTGGCGTGGCATAGGCGTTTTGCATATCCACCACGATCAGCGCACTTTGCTGCGGATCGAAGGTAATGGCTTCCGGTCGAGCGGTTAATGTCGTCATCATGCCACCTCCTGAGTCAGCACAGGGAGATGGGCGCGGCAC",
	"dna_sequence_ncbi" => null,
	"priority" => "1",
	"project" => "UVA:Rut",
	"selection_phase" => null,
	"date_selected" => "2010-12-15",
	"date_approved" => "2010-12-15",
	"completion_code" => null,
	"pi" => null,
	"tms" => null,
	"sp" => null,
	"core_genome" => null,
	"gram_minus_gene_homolog" => null,
	"gram_plus_gene_homolog" => null,
	"protease_motifs" => null,
	"glycosyl_group_metabolism" => null,
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	"virulence_genes" => null,
	"essential_genes_homologs" => null,
	"dna_binding_motifs" => null,
	"inserted" => "2010-12-15 22:55:07.994535+00",
	"updated" => "2010-12-15 22:55:07.994535+00",
	"species_taxon_id" => "562",
	"ins_user_id" => "2",
	"upd_user_id" => null,
	"stage" => "crystallized",
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	"submitter_id" => "17",
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	"dna_source_taxon_id" => null,
	"batch" => null,
	"genus_taxon_id" => "561",
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	"uniprot_id" => null,
	"ec" => null,
	"target_family" => null,
	"tar_designpool_id" => null,
	"community_nominated" => false,
	"partnership_nominated" => null,
	"biomedical" => false,
	"metagenomic" => false,
	"structural_coverage" => false,
	"psi2" => false,
	"legacy" => false,
	"complex_with_biological_partner" => false,
	"functional_mutant" => false,
	"conformational_state" => false,
	"disease" => false,
	"individual_organism" => false,
	"protein_family_of_high_biological_importance" => false,
	"general_domain_family" => false,
	"eukaryotic_domain_family" => false,
	"first_structure_of_class" => false,
	"functional_follow_up" => false,
	"technology_development" => false,
	"membrane_protein" => false,
	"translated_dna_sequence" => "LSDTSKGRGRKRVAERFDVADPAKKGFDIEQRGFLYKFRPRLVCCVFQHHAEILQKKAIA*RRFDADVGSDAGENQMAYSAAAQNAVQRRIEETAVARLRQHNIARLRHQFIHQLIIPGAFRQQFPLQLRLFTHGFQGVRFMKIR*ARAASLDILFIPAILKPDDQHPCRSRCGHGGLNVGNDRASG*DIKPGEI*VAAWRGIGVLHIHHDQRTLLRIEGNGFRSSG*CRHHATS*VSTGRWARH",
	"family_coverage" => null,
	"family_coverage_date" => null,
	"distribution_lab" => null,
	"uniprot_accession" => null,
	"protocol_id" => "Target_selection",
	"ensembl_protein_id" => null,
	"ensembl_gene_id" => null,
	"type" => "single protein",
	"ligand_studies" => false,
	"protein_production_for_partnerships" => false,
	"single_domain_protein" => false,
	"multidomain_protein" => false,
	"oligomeric_protein" => false,
	"eukaryotic_protein" => false,
	"protein_protein_complex" => false,
	"protein_nucleic_acid_complex" => false,
	"protein_ligand_complex" => false,
	"de_novo_designed_protein" => false,
	"post_translational_modification" => false
),
	"ProteinClone" => array(
	array()
)
)
$filteredLabs	=	array(
	"UVA",
	"NU",
	"UT",
	"WU"
)
$highlighted	=	array()
$paths	=	array(
	array(
	"Target___490002"
),
	array(
	"Target___490002",
	"ProteinClone___4038"
),
	array(
	"Target___490002",
	"ProteinClone___4038",
	"Expression___2605"
)
)
$tips	=	array(
	"Target___490002" => array(
	"title" => "Target 490002",
	"text" => "Putative synthetase [Escherichia coli O55:H7 str. CB9615]"
),
	"ProteinClone___4038" => array(
	"title" => "Clone",
	"text" => "sequence range: 1-231<br>vector: pET15bHisTEV<br>person: Aleksandra Knapik"
),
	"Expression___2605" => array(
	"title" => "Expression",
	"text" => "expression level: N/A<br>solubility level: 100.0%<br>media: M9 minimal media+SeMet (1000mL)<br>induction: IPTG (16&deg;C)<br>person: Aleksandra Knapik"
),
	"Purification___277" => array(
	"title" => "Purification",
	"text" => "final concentration: 10mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Aleksandra Knapik"
)
)
$root	=	array(
	"id" => "Target___490002",
	"name" => "T  490002",
	"data" => array()
)
$clones	=	array()
$sclone	=	array(
	"id" => "4038",
	"target_id" => "490002",
	"clone_suffix" => "25",
	"sequence_start" => "1",
	"sequence_end" => "231",
	"sequence" => "",
	"sequence_comments" => null,
	"local_protein_target_id" => "988",
	"local_clone_plate_id" => null,
	"local_clone_id" => "25",
	"experiment_date_start" => "2010-05-10",
	"experiment_date_end" => "2010-06-15",
	"staff_id" => "77",
	"other_people" => null,
	"lab_id" => "UVA",
	"protocol_id" => "uva_cloning_1",
	"status" => "success",
	"vector" => "pET15bHisTEV",
	"pcr_primer_forward" => "GAA TTC CAT ATG atg acg acc tta acc gct cg",
	"pcr_primer_backward" => "AT CTC GAG TTA agc gat acg acg aaa gga cg",
	"shipped_to_lab_id" => null,
	"shipped_date" => null,
	"inserted" => "2010-12-17 19:25:52.308781+00",
	"ins_user_id" => null,
	"update" => "2014-05-20 02:00:01.814447+00",
	"upd_user_id" => "1",
	"secondary_shipped_to_lab_id" => null,
	"secondary_shipped_date" => null,
	"external_source" => false,
	"mutation" => null,
	"bei_available" => false,
	"bei_number" => null,
	"reference_sequence_variance" => null,
	"confirmed_dna_sequence" => null,
	"confirmed_protein_sequence" => null,
	"present_in_lims" => false,
	"template_dna_sequence" => "",
	"lims_date" => "2010-12-17",
	"dummy" => false,
	"type" => null,
	"clone_annotation" => null,
	"optimized_dna_sequence" => null,
	"optimized" => false,
	"truncated" => false,
	"synthetic" => false,
	"Staff" => array(
	"id" => "77",
	"first_name" => "Aleksandra",
	"last_name" => "Knapik",
	"email" => "aleksandra@iwonka.med.virginia.edu",
	"phone" => null,
	"lab_id" => "UVA",
	"responsibility" => "",
	"databases" => false,
	"admin" => false,
	"protein_production" => true,
	"crystallography" => true,
	"pi" => false,
	"lab_contact" => false,
	"inserted" => "2008-12-16 19:42:01.131538+00",
	"updated" => "2009-01-14 18:02:39+00",
	"institution_id" => "5",
	"middle_initials" => null,
	"active" => true,
	"manager" => false,
	"function" => null,
	"real_id" => "77"
),
	"Expression" => array(
	array(),
	array(),
	array(),
	array()
)
)
$iclone	=	array(
	"id" => "ProteinClone___4038",
	"name" => "C  .05/10/10",
	"data" => array(),
	"children" => array()
)
$sexpr	=	array(
	"id" => "2605",
	"target_id" => "490002",
	"expression_suffix" => "254",
	"clone_id" => "4038",
	"clone_suffix" => "25",
	"local_clone_id" => "25",
	"local_protein_target_id" => "988",
	"local_expression_id" => "254",
	"experiment_date_start" => "2010-06-13",
	"experiment_date_end" => "2010-06-15",
	"staff_id" => "77",
	"other_people" => null,
	"lab_id" => "UVA",
	"protocol_id" => "uva_expression_semet_1",
	"status" => "success",
	"expression_organism" => "E.coli",
	"expression_strain" => "BL21(DE3)Codon Plus RIL",
	"media_type" => "M9 minimal media+SeMet",
	"media_volume" => "1000",
	"growth_temperature" => "37",
	"induction_temperature" => "16",
	"induction_reagent" => "IPTG",
	"experiment_type" => "production",
	"expression_level" => null,
	"solubility_level" => "100",
	"inserted" => "2010-12-17 19:26:52.322049+00",
	"ins_user_id" => null,
	"update" => "2014-05-20 02:00:02.435148+00",
	"upd_user_id" => "1",
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	"lims_date" => "2010-12-17",
	"dummy" => false,
	"Staff" => array(
	"id" => "77",
	"first_name" => "Aleksandra",
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	"email" => "aleksandra@iwonka.med.virginia.edu",
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	"lab_id" => "UVA",
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	"protein_production" => true,
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),
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	array()
)
)
$iexpr	=	array(
	"id" => "Expression___2605",
	"name" => "E  .06/13/10",
	"data" => array(),
	"children" => array()
)
$expression_level	=	"N/A"
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	"target_id" => "490002",
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	"affinity_tag_status" => "na",
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	"final_concentration" => "10",
	"final_volume" => "2000",
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	"Hsqc" => array()
)
$ipur	=	array(
	"id" => "Purification___277",
	"name" => "P  .06/15/10"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

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