Code |
Context $json = $this->create_JSON($id, '___');
} else {
$json = $this->create_JSON($target_id, '___');
$target_id = "491008"
$split = "___"
$target = array(
"Target" => array(
"id" => "11037",
"target_id" => "491008",
"local_target_id" => "491008",
"locus_tag" => null,
"ncbi_gi" => "193085052",
"ncbi_accession" => "ACF10391.1",
"ncbi_geneid" => null,
"ncbi_taxon_id" => "9925",
"gene_name" => null,
"common_name" => "albumin precursor [Capra hircus]",
"ncbi_coded_by_region" => null,
"ncbi_note" => null,
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => "Functional studies of the serum albumin precursors",
"sequence" => "DTHKSEIAHRFNDLGEENFQGLVLIAFSQYLQQCPFDEHVKLVKELTEFAKTCVADESHAGCDKSLHTLFGDELCKVATLRETYGDMADCCEKQEPERNECFLKHKDDSPDLPKLKPEPDTLCAEFKADEKKFWGKYLYEVARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKADFTDVTKIVTDLTKVHKECCHGDLLECADDRADLAKYICDHQDTLSSKLKECCDKPVLEKSHCIAEIDKDAVPENLPPLTADFAEDKEVCKNYQEAKDVFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEDCCAKEDPHACYATVFDKLKHLVDEPQNLIKKNCELFEKHGEYGFQNALIVRYTRKAPQVSTPTLVEISRSLGKVGTKCCAKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSDLTLDETYVPKPFDGESFTFHADICTLPDTEKQIKKQTALVELLKHKPKATDEQLKTVMENFVAFVDKCCAADDKEGCFLLEGPKLVASTQAALA",
"sequence_length" => "583",
"dna_sequence" => null,
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "UVA:Albumins",
"selection_phase" => null,
"date_selected" => "2011-03-21",
"date_approved" => "2011-03-21",
"completion_code" => null,
"pi" => null,
"tms" => null,
"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-03-21 19:35:56.137129+00",
"updated" => "2011-03-21 19:35:56.137129+00",
"species_taxon_id" => "9925",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "diffraction",
"hidden" => false,
"submitter_id" => null,
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => "Albumins",
"genus_taxon_id" => "9922",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => null,
"biomedical" => false,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => "",
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => null,
"ensembl_gene_id" => null,
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
"ProteinClone" => array(
array()
)
)
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"UVA",
"NU",
"UT",
"WU"
)
$highlighted = array()
$paths = array(
array(
"Target___491008"
),
array(
"Target___491008",
"ProteinClone___56950"
),
array(
"Target___491008",
"ProteinClone___56950",
"Expression___8009"
)
)
$tips = array(
"Target___491008" => array(
"title" => "Target 491008",
"text" => "albumin precursor [Capra hircus]"
),
"ProteinClone___56950" => array(
"title" => "Clone",
"text" => "sequence range: 0-0<br>vector: n/a<br>person: Karolina Majorek"
),
"Expression___8009" => array(
"title" => "Expression",
"text" => "expression level: N/A<br>solubility level: N/A<br>media: n/a (0mL)<br>induction: n/a (0°C)<br>person: Karolina Majorek"
),
"Purification___5584" => array(
"title" => "Purification",
"text" => "final concentration: 15mg/mL<br>SeMet: native<br>affinity tag: na<br>person: Katarzyna Handing"
)
)
$root = array(
"id" => "Target___491008",
"name" => "T 491008",
"data" => array()
)
$clones = array()
$sclone = array(
"id" => "56950",
"target_id" => "491008",
"clone_suffix" => "-1",
"sequence_start" => "0",
"sequence_end" => "0",
"sequence" => null,
"sequence_comments" => null,
"local_protein_target_id" => null,
"local_clone_plate_id" => null,
"local_clone_id" => "n/a",
"experiment_date_start" => "1979-01-01",
"experiment_date_end" => null,
"staff_id" => "94",
"other_people" => null,
"lab_id" => "UVA",
"protocol_id" => "n/a",
"status" => "n/a",
"vector" => "n/a",
"pcr_primer_forward" => null,
"pcr_primer_backward" => null,
"shipped_to_lab_id" => null,
"shipped_date" => null,
"inserted" => "2011-12-08 22:53:36.655997+00",
"ins_user_id" => "1",
"update" => "2011-12-08 22:53:36.655997+00",
"upd_user_id" => "1",
"secondary_shipped_to_lab_id" => null,
"secondary_shipped_date" => null,
"external_source" => false,
"mutation" => null,
"bei_available" => false,
"bei_number" => null,
"reference_sequence_variance" => null,
"confirmed_dna_sequence" => null,
"confirmed_protein_sequence" => null,
"present_in_lims" => false,
"template_dna_sequence" => null,
"lims_date" => "2011-12-08",
"dummy" => true,
"type" => null,
"clone_annotation" => null,
"optimized_dna_sequence" => null,
"optimized" => false,
"truncated" => false,
"synthetic" => false,
"Staff" => array(
"id" => "94",
"first_name" => "Karolina",
"last_name" => "Majorek",
"email" => "karolina_m@iwonka.med.virginia.edu",
"phone" => null,
"lab_id" => "UVA",
"responsibility" => "",
"databases" => false,
"admin" => false,
"protein_production" => true,
"crystallography" => true,
"pi" => false,
"lab_contact" => false,
"inserted" => "2009-04-20 19:01:03.900644+00",
"updated" => "2009-04-20 19:01:03.900644+00",
"institution_id" => "5",
"middle_initials" => null,
"active" => true,
"manager" => false,
"function" => null,
"real_id" => "94"
),
"Expression" => array(
array()
)
)
$iclone = array(
"id" => "ProteinClone___56950",
"name" => "N/A",
"data" => array(),
"children" => array()
)
$sexpr = array(
"id" => "8009",
"target_id" => "491008",
"expression_suffix" => "-1",
"clone_id" => "56950",
"clone_suffix" => null,
"local_clone_id" => null,
"local_protein_target_id" => null,
"local_expression_id" => "n/a",
"experiment_date_start" => "1979-01-01",
"experiment_date_end" => null,
"staff_id" => "94",
"other_people" => null,
"lab_id" => "UVA",
"protocol_id" => "n/a",
"status" => "n/a",
"expression_organism" => "n/a",
"expression_strain" => "n/a",
"media_type" => "n/a",
"media_volume" => "0",
"growth_temperature" => "0",
"induction_temperature" => "0",
"induction_reagent" => "n/a",
"experiment_type" => "n/a",
"expression_level" => null,
"solubility_level" => null,
"inserted" => "2011-12-08 22:53:36.690775+00",
"ins_user_id" => "1",
"update" => "2011-12-08 22:53:36.690775+00",
"upd_user_id" => "1",
"present_in_lims" => false,
"lims_date" => "2011-12-08",
"dummy" => true,
"Staff" => array(
"id" => "94",
"first_name" => "Karolina",
"last_name" => "Majorek",
"email" => "karolina_m@iwonka.med.virginia.edu",
"phone" => null,
"lab_id" => "UVA",
"responsibility" => "",
"databases" => false,
"admin" => false,
"protein_production" => true,
"crystallography" => true,
"pi" => false,
"lab_contact" => false,
"inserted" => "2009-04-20 19:01:03.900644+00",
"updated" => "2009-04-20 19:01:03.900644+00",
"institution_id" => "5",
"middle_initials" => null,
"active" => true,
"manager" => false,
"function" => null,
"real_id" => "94"
),
"Purification" => array(
array(),
array(),
array()
)
)
$iexpr = array(
"id" => "Expression___8009",
"name" => "N/A",
"data" => array(),
"children" => array()
)
$expression_level = "N/A"
$solubility_level = "N/A"
$spur = array(
"id" => "5584",
"target_id" => "491008",
"purification_suffix" => "793",
"expression_id" => "8009",
"local_expression_id" => "-11",
"local_protein_target_id" => "1270",
"local_purification_id" => "793",
"experiment_date_start" => "2014-04-24",
"experiment_date_end" => "2014-04-24",
"staff_id" => "449527",
"other_people" => null,
"lab_id" => "UVA",
"protocol_id" => "allergens_purification_1",
"status" => "success",
"description" => "",
"affinity_tag_status" => "na",
"semet_status" => "native",
"covalent_modification" => null,
"final_buffer" => "",
"final_concentration" => "15",
"final_volume" => "0",
"shipped_to_lab_id" => null,
"shipped_date" => null,
"inserted" => "2014-05-13 10:08:30.855137+00",
"ins_user_id" => null,
"update" => "2014-05-20 02:00:06.166402+00",
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"dummy" => false,
"yield" => null,
"Staff" => array(
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"email" => "kasia_m@iwonka.med.virginia.edu",
"phone" => "434-924-2948",
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"protein_production" => true,
"crystallography" => true,
"pi" => false,
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"inserted" => "2013-03-22 17:04:22.756632+00",
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),
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"Hsqc" => array()
)
$ipur = array(
"id" => "Purification___5584",
"name" => "P .04/24/14"
)
Unitrack_SpaceTreeController::create_JSON() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 205
Unitrack_SpaceTreeController::view() - /var/www/unitrack/controllers/unitrack_space_tree_controller.php, line 48
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83
