015890 |
0 - 0 |
|
Notice (8): Undefined index: score [/var/www/unitrack/views/subtargets/unitrack_index.ctp, line 52]Code | Context<?php include(UNITRACK . '/views/subtargets/unitrack_index.ctp'); ?>
$___viewFn = "/var/www/html/nysgrc/app/views/subtargets/index.ctp"
$___dataForView = array(
"colors" => array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"in_pdb" => "#FFC0C0"
),
"subtargets" => array(
array()
),
"view_own" => true,
"view_others" => true,
"edit_admin" => false,
"edit_other_profile" => false,
"edit_group_profile" => false,
"edit_own_profile" => false,
"edit_others" => false,
"edit_group" => false,
"edit_own" => false,
"view_request" => false,
"view_group" => true,
"view_contact_only" => false,
"view_pi_only" => false,
"view_vip_only" => false,
"controller" => SubtargetsController
SubtargetsController::$name = "Subtargets"
SubtargetsController::$helpers = array
SubtargetsController::$restrict = array
SubtargetsController::$uses = array
SubtargetsController::$components = array
SubtargetsController::$publicControllers = array
SubtargetsController::$here = "/nysgrc/subtargets/index/015890"
SubtargetsController::$webroot = "/nysgrc/"
SubtargetsController::$action = "index"
SubtargetsController::$params = array
SubtargetsController::$data = NULL
SubtargetsController::$paginate = array
SubtargetsController::$viewPath = "subtargets"
SubtargetsController::$layoutPath = NULL
SubtargetsController::$viewVars = array
SubtargetsController::$modelNames = array
SubtargetsController::$base = "/nysgrc"
SubtargetsController::$layout = "default"
SubtargetsController::$autoRender = false
SubtargetsController::$autoLayout = true
SubtargetsController::$Component = Component object
SubtargetsController::$view = "View"
SubtargetsController::$ext = ".ctp"
SubtargetsController::$output = NULL
SubtargetsController::$plugin = NULL
SubtargetsController::$cacheAction = false
SubtargetsController::$persistModel = false
SubtargetsController::$passedArgs = array
SubtargetsController::$scaffold = false
SubtargetsController::$methods = array
SubtargetsController::$modelClass = "Subtarget"
SubtargetsController::$modelKey = "subtarget"
SubtargetsController::$validationErrors = NULL
SubtargetsController::$__httpCodes = NULL
SubtargetsController::$Auth = AuthComponent object
SubtargetsController::$RequestHandler = RequestHandlerComponent object
SubtargetsController::$Session = SessionComponent object
SubtargetsController::$Toolbox = ToolboxComponent object
SubtargetsController::$DataPipeline = DataPipelineComponent object
SubtargetsController::$Subtarget = Subtarget object
SubtargetsController::$SubtargetAssignment = SubtargetAssignment object
SubtargetsController::$Lab = Lab object
SubtargetsController::$User = User object
)
$loadHelpers = true
$cached = false
$paginator = PaginatorHelper
PaginatorHelper::$helpers = array
PaginatorHelper::$__defaultModel = "Subtarget"
PaginatorHelper::$_ajaxHelperClass = "Js"
PaginatorHelper::$options = array
PaginatorHelper::$base = "/nysgrc"
PaginatorHelper::$webroot = "/nysgrc/"
PaginatorHelper::$theme = NULL
PaginatorHelper::$here = "/nysgrc/subtargets/index/015890"
PaginatorHelper::$params = array
PaginatorHelper::$action = "index"
PaginatorHelper::$plugin = NULL
PaginatorHelper::$data = NULL
PaginatorHelper::$namedArgs = NULL
PaginatorHelper::$argSeparator = NULL
PaginatorHelper::$validationErrors = NULL
PaginatorHelper::$tags = array
PaginatorHelper::$__tainted = NULL
PaginatorHelper::$__cleaned = NULL
PaginatorHelper::$Html = HtmlHelper object
PaginatorHelper::$Js = JsHelper object
$date = DateHelper
DateHelper::$helpers = NULL
DateHelper::$base = "/nysgrc"
DateHelper::$webroot = "/nysgrc/"
DateHelper::$theme = NULL
DateHelper::$here = "/nysgrc/subtargets/index/015890"
DateHelper::$params = array
DateHelper::$action = "index"
DateHelper::$plugin = NULL
DateHelper::$data = NULL
DateHelper::$namedArgs = NULL
DateHelper::$argSeparator = NULL
DateHelper::$validationErrors = NULL
DateHelper::$tags = array
DateHelper::$__tainted = NULL
DateHelper::$__cleaned = NULL
$jqueryEngine = JqueryEngineHelper
JqueryEngineHelper::$_optionMap = array
JqueryEngineHelper::$_callbackArguments = array
JqueryEngineHelper::$jQueryObject = "$"
JqueryEngineHelper::$useNative = true
JqueryEngineHelper::$selection = NULL
JqueryEngineHelper::$bufferedMethods = array
JqueryEngineHelper::$helpers = NULL
JqueryEngineHelper::$base = "/nysgrc"
JqueryEngineHelper::$webroot = "/nysgrc/"
JqueryEngineHelper::$theme = NULL
JqueryEngineHelper::$here = "/nysgrc/subtargets/index/015890"
JqueryEngineHelper::$params = array
JqueryEngineHelper::$action = "index"
JqueryEngineHelper::$plugin = NULL
JqueryEngineHelper::$data = NULL
JqueryEngineHelper::$namedArgs = NULL
JqueryEngineHelper::$argSeparator = NULL
JqueryEngineHelper::$validationErrors = NULL
JqueryEngineHelper::$tags = array
JqueryEngineHelper::$__tainted = NULL
JqueryEngineHelper::$__cleaned = NULL
$js = JsHelper
JsHelper::$bufferScripts = true
JsHelper::$helpers = array
JsHelper::$__jsVars = array
JsHelper::$__bufferedScripts = array
JsHelper::$__engineName = "JqueryEngine"
JsHelper::$setVariable = "app"
JsHelper::$base = "/nysgrc"
JsHelper::$webroot = "/nysgrc/"
JsHelper::$theme = NULL
JsHelper::$here = "/nysgrc/subtargets/index/015890"
JsHelper::$params = array
JsHelper::$action = "index"
JsHelper::$plugin = NULL
JsHelper::$data = NULL
JsHelper::$namedArgs = NULL
JsHelper::$argSeparator = NULL
JsHelper::$validationErrors = NULL
JsHelper::$tags = array
JsHelper::$__tainted = NULL
JsHelper::$__cleaned = NULL
JsHelper::$Html = HtmlHelper object
JsHelper::$Form = FormHelper object
JsHelper::$JqueryEngine = JqueryEngineHelper object
$form = FormHelper
FormHelper::$helpers = array
FormHelper::$fieldset = array
FormHelper::$__options = array
FormHelper::$fields = array
FormHelper::$requestType = NULL
FormHelper::$defaultModel = NULL
FormHelper::$_inputDefaults = array
FormHelper::$_lastAction = ""
FormHelper::$base = "/nysgrc"
FormHelper::$webroot = "/nysgrc/"
FormHelper::$theme = NULL
FormHelper::$here = "/nysgrc/subtargets/index/015890"
FormHelper::$params = array
FormHelper::$action = "index"
FormHelper::$plugin = NULL
FormHelper::$data = NULL
FormHelper::$namedArgs = NULL
FormHelper::$argSeparator = NULL
FormHelper::$validationErrors = NULL
FormHelper::$tags = array
FormHelper::$__tainted = NULL
FormHelper::$__cleaned = NULL
FormHelper::$Html = HtmlHelper object
$javascript = JavascriptHelper
JavascriptHelper::$useNative = true
JavascriptHelper::$enabled = true
JavascriptHelper::$safe = false
JavascriptHelper::$tags = array
JavascriptHelper::$_blockOptions = array
JavascriptHelper::$_cachedEvents = array
JavascriptHelper::$_cacheEvents = false
JavascriptHelper::$_cacheToFile = false
JavascriptHelper::$_cacheAll = false
JavascriptHelper::$_rules = array
JavascriptHelper::$__scriptBuffer = NULL
JavascriptHelper::$helpers = NULL
JavascriptHelper::$base = "/nysgrc"
JavascriptHelper::$webroot = "/nysgrc/"
JavascriptHelper::$theme = NULL
JavascriptHelper::$here = "/nysgrc/subtargets/index/015890"
JavascriptHelper::$params = array
JavascriptHelper::$action = "index"
JavascriptHelper::$plugin = NULL
JavascriptHelper::$data = NULL
JavascriptHelper::$namedArgs = NULL
JavascriptHelper::$argSeparator = NULL
JavascriptHelper::$validationErrors = NULL
JavascriptHelper::$__tainted = NULL
JavascriptHelper::$__cleaned = NULL
$ajax = AjaxHelper
AjaxHelper::$helpers = array
AjaxHelper::$Html = HtmlHelper object
AjaxHelper::$Javascript = JavascriptHelper object
AjaxHelper::$callbacks = array
AjaxHelper::$ajaxOptions = array
AjaxHelper::$dragOptions = array
AjaxHelper::$dropOptions = array
AjaxHelper::$sortOptions = array
AjaxHelper::$sliderOptions = array
AjaxHelper::$editorOptions = array
AjaxHelper::$autoCompleteOptions = array
AjaxHelper::$__ajaxBuffer = array
AjaxHelper::$base = "/nysgrc"
AjaxHelper::$webroot = "/nysgrc/"
AjaxHelper::$theme = NULL
AjaxHelper::$here = "/nysgrc/subtargets/index/015890"
AjaxHelper::$params = array
AjaxHelper::$action = "index"
AjaxHelper::$plugin = NULL
AjaxHelper::$data = NULL
AjaxHelper::$namedArgs = NULL
AjaxHelper::$argSeparator = NULL
AjaxHelper::$validationErrors = NULL
AjaxHelper::$tags = array
AjaxHelper::$__tainted = NULL
AjaxHelper::$__cleaned = NULL
AjaxHelper::$Form = FormHelper object
$session = SessionHelper
SessionHelper::$helpers = array
SessionHelper::$__active = true
SessionHelper::$valid = false
SessionHelper::$error = false
SessionHelper::$_userAgent = "5a088fb542c1b540ccb30719553be0ff"
SessionHelper::$path = "/"
SessionHelper::$lastError = NULL
SessionHelper::$security = "medium"
SessionHelper::$time = 1660446099
SessionHelper::$sessionTime = 1660458099
SessionHelper::$cookieLifeTime = false
SessionHelper::$watchKeys = array
SessionHelper::$id = NULL
SessionHelper::$host = NULL
SessionHelper::$timeout = NULL
SessionHelper::$base = "/nysgrc"
SessionHelper::$webroot = "/nysgrc/"
SessionHelper::$here = "/nysgrc/subtargets/index/015890"
SessionHelper::$params = array
SessionHelper::$action = "index"
SessionHelper::$data = NULL
SessionHelper::$theme = NULL
SessionHelper::$plugin = NULL
$html = HtmlHelper
HtmlHelper::$tags = array
HtmlHelper::$_crumbs = array
HtmlHelper::$__includedScripts = array
HtmlHelper::$_scriptBlockOptions = array
HtmlHelper::$__docTypes = array
HtmlHelper::$helpers = NULL
HtmlHelper::$base = "/nysgrc"
HtmlHelper::$webroot = "/nysgrc/"
HtmlHelper::$theme = NULL
HtmlHelper::$here = "/nysgrc/subtargets/index/015890"
HtmlHelper::$params = array
HtmlHelper::$action = "index"
HtmlHelper::$plugin = NULL
HtmlHelper::$data = NULL
HtmlHelper::$namedArgs = NULL
HtmlHelper::$argSeparator = NULL
HtmlHelper::$validationErrors = NULL
HtmlHelper::$__tainted = NULL
HtmlHelper::$__cleaned = NULL
$actions = ActionsHelper
ActionsHelper::$helpers = array
ActionsHelper::$addIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_01.png"
ActionsHelper::$listIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_61.png"
ActionsHelper::$deleteIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_02.png"
ActionsHelper::$editIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_45.png"
ActionsHelper::$loginIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_59.png"
ActionsHelper::$logoutIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_51.png"
ActionsHelper::$cancelIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_05.png"
ActionsHelper::$okIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_06.png"
ActionsHelper::$settingsIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_41.png"
ActionsHelper::$bugIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_50.png"
ActionsHelper::$menuIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_20.png"
ActionsHelper::$lockIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_42.png"
ActionsHelper::$warningIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_11.png"
ActionsHelper::$internalIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_37.png"
ActionsHelper::$base = "/nysgrc"
ActionsHelper::$webroot = "/nysgrc/"
ActionsHelper::$theme = NULL
ActionsHelper::$here = "/nysgrc/subtargets/index/015890"
ActionsHelper::$params = array
ActionsHelper::$action = "index"
ActionsHelper::$plugin = NULL
ActionsHelper::$data = NULL
ActionsHelper::$namedArgs = NULL
ActionsHelper::$argSeparator = NULL
ActionsHelper::$validationErrors = NULL
ActionsHelper::$tags = array
ActionsHelper::$__tainted = NULL
ActionsHelper::$__cleaned = NULL
ActionsHelper::$Html = HtmlHelper object
ActionsHelper::$Session = SessionHelper object
ActionsHelper::$Ajax = AjaxHelper object
$colors = array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"in_pdb" => "#FFC0C0"
)
$subtargets = array(
array(
"Subtarget" => array(),
"Target" => array(),
"Assignment" => array()
)
)
$view_own = true
$view_others = true
$edit_admin = false
$edit_other_profile = false
$edit_group_profile = false
$edit_own_profile = false
$edit_others = false
$edit_group = false
$edit_own = false
$view_request = false
$view_group = true
$view_contact_only = false
$view_pi_only = false
$view_vip_only = false
$controller = SubtargetsController
SubtargetsController::$name = "Subtargets"
SubtargetsController::$helpers = array
SubtargetsController::$restrict = array
SubtargetsController::$uses = array
SubtargetsController::$components = array
SubtargetsController::$publicControllers = array
SubtargetsController::$here = "/nysgrc/subtargets/index/015890"
SubtargetsController::$webroot = "/nysgrc/"
SubtargetsController::$action = "index"
SubtargetsController::$params = array
SubtargetsController::$data = NULL
SubtargetsController::$paginate = array
SubtargetsController::$viewPath = "subtargets"
SubtargetsController::$layoutPath = NULL
SubtargetsController::$viewVars = array
SubtargetsController::$modelNames = array
SubtargetsController::$base = "/nysgrc"
SubtargetsController::$layout = "default"
SubtargetsController::$autoRender = false
SubtargetsController::$autoLayout = true
SubtargetsController::$Component = Component object
SubtargetsController::$view = "View"
SubtargetsController::$ext = ".ctp"
SubtargetsController::$output = NULL
SubtargetsController::$plugin = NULL
SubtargetsController::$cacheAction = false
SubtargetsController::$persistModel = false
SubtargetsController::$passedArgs = array
SubtargetsController::$scaffold = false
SubtargetsController::$methods = array
SubtargetsController::$modelClass = "Subtarget"
SubtargetsController::$modelKey = "subtarget"
SubtargetsController::$validationErrors = NULL
SubtargetsController::$__httpCodes = NULL
SubtargetsController::$Auth = AuthComponent object
SubtargetsController::$RequestHandler = RequestHandlerComponent object
SubtargetsController::$Session = SessionComponent object
SubtargetsController::$Toolbox = ToolboxComponent object
SubtargetsController::$DataPipeline = DataPipelineComponent object
SubtargetsController::$Subtarget = Subtarget object
SubtargetsController::$SubtargetAssignment = SubtargetAssignment object
SubtargetsController::$Lab = Lab object
SubtargetsController::$User = User object
$center_id = "NYSGRC"
$i = 1
$subtarget = array(
"Subtarget" => array(
"id" => "7056",
"target_id" => "015890",
"sequence_start" => "0",
"sequence_end" => "0",
"mutation" => "",
"sequence" => "",
"dna_sequence" => null,
"sequence_comments" => null,
"date_selected" => null,
"priority" => null,
"inserted" => "2012-05-14 21:23:49.946858+00",
"updated" => "2012-05-14 21:23:49.946858+00",
"lab_assigned" => "AECOM",
"date_assigned" => null
),
"Target" => array(
"id" => "16273",
"target_id" => "015890",
"local_target_id" => "015890",
"locus_tag" => "P9215_18071",
"ncbi_gi" => "157414140",
"ncbi_accession" => "YP_001485006.1",
"ncbi_geneid" => "5614696",
"ncbi_taxon_id" => "93060",
"gene_name" => "rpoA",
"common_name" => "DNA-directed RNA polymerase subunit alpha [Prochlorococcus marinus str. MIT 9215]",
"ncbi_coded_by_region" => "complement(NC_009840.1:1556474..1557412)",
"ncbi_note" => "catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme",
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => null,
"sequence" => "MLQYQIDRIDHQIADDRSQTGTFLIGPLERGQATTLGNSLRRVLMGGLEGSAVTAVRIAGINHEYATIPGVREDVLDILLNCKQLSINSSSPDLEIGRLVASGPMDVKANDIQFSSQVEIVDGEKPIATIQEGHNLELEIHVERGVGYRPVDRKSEETTAIDLLQIDAVFMPVKRVNFTIDETAVAEGGTGRERLKMEVVTDGSTSPDDAIAEAANQLIELFQPLATVTMVEEIPEEPEPSPEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIDALERIGISIPQSRTSV",
"sequence_length" => "312",
"dna_sequence" => "GTGTTGCAATACCAGATTGACAGAATCGACCATCAAATAGCAGATGATCGCTCCCAAACAGGAACTTTTTTAATTGGCCCTCTAGAAAGGGGACAAGCTACAACTTTGGGTAATTCTCTCAGAAGAGTCCTTATGGGAGGACTTGAAGGGAGTGCAGTTACTGCAGTAAGAATAGCAGGAATTAATCATGAATATGCCACTATTCCTGGAGTTAGAGAGGACGTTTTGGATATTCTTCTCAATTGCAAGCAACTTTCTATAAATAGTTCTAGCCCAGACCTCGAAATTGGGAGGTTAGTAGCGAGTGGACCAATGGATGTGAAGGCGAATGACATACAATTTTCCTCTCAAGTTGAAATTGTTGATGGCGAAAAACCCATCGCAACTATTCAGGAGGGTCATAACTTAGAGTTAGAAATTCATGTTGAAAGAGGTGTTGGATATAGACCTGTTGATCGTAAGAGTGAAGAGACAACTGCTATTGATTTACTTCAAATAGATGCTGTATTTATGCCAGTAAAGAGGGTAAATTTTACGATTGATGAAACTGCTGTAGCAGAAGGAGGAACAGGAAGAGAAAGATTAAAAATGGAAGTTGTAACAGATGGATCAACAAGTCCTGATGATGCTATTGCTGAAGCTGCAAATCAGTTAATAGAACTCTTTCAACCTCTTGCTACCGTTACAATGGTTGAGGAAATTCCTGAAGAACCTGAACCATCTCCTGAAGCTCAAATTCCTCTTGAGGAACTAAATTTGTCCGTTAGAGCATATAATTGTTTGAAAAGGGCTCAAGTTAACTCAGTTTCGGATTTAATGGGCTTCAGCTATGAAGATCTTCTTGAAATTAAGAACTTTGGTTCTAAATCTGCAGATGAGGTTATTGACGCTCTTGAGCGCATTGGCATTTCTATTCCACAAAGCAGAACATCTGTTTAA",
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "BIO:PRO",
"selection_phase" => null,
"date_selected" => "2011-12-13",
"date_approved" => null,
"completion_code" => null,
"pi" => null,
"tms" => null,
"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-12-13 20:50:22.917551+00",
"updated" => "2011-12-13 20:50:22.917551+00",
"species_taxon_id" => "1219",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "cloned",
"hidden" => false,
"submitter_id" => "212",
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => "prochlorococcus batch 1",
"genus_taxon_id" => "1218",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => null,
"biomedical" => true,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => null,
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => null,
"ensembl_gene_id" => null,
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
"Assignment" => array(
array()
)
)
$lclass = " class="link altrow""
$class = " class="altrow""
$rand = 776198494 include - /var/www/unitrack/views/subtargets/unitrack_index.ctp, line 52
include - APP/views/subtargets/index.ctp, line 1
View::_render() - CORE/cake/libs/view/view.php, line 736
View::render() - CORE/cake/libs/view/view.php, line 431
Controller::render() - CORE/cake/libs/controller/controller.php, line 909
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 207
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83 |
Notice (8): Undefined index: xtalpred [/var/www/unitrack/views/subtargets/unitrack_index.ctp, line 55]Code | Context<?php include(UNITRACK . '/views/subtargets/unitrack_index.ctp'); ?>
$___viewFn = "/var/www/html/nysgrc/app/views/subtargets/index.ctp"
$___dataForView = array(
"colors" => array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"in_pdb" => "#FFC0C0"
),
"subtargets" => array(
array()
),
"view_own" => true,
"view_others" => true,
"edit_admin" => false,
"edit_other_profile" => false,
"edit_group_profile" => false,
"edit_own_profile" => false,
"edit_others" => false,
"edit_group" => false,
"edit_own" => false,
"view_request" => false,
"view_group" => true,
"view_contact_only" => false,
"view_pi_only" => false,
"view_vip_only" => false,
"controller" => SubtargetsController
SubtargetsController::$name = "Subtargets"
SubtargetsController::$helpers = array
SubtargetsController::$restrict = array
SubtargetsController::$uses = array
SubtargetsController::$components = array
SubtargetsController::$publicControllers = array
SubtargetsController::$here = "/nysgrc/subtargets/index/015890"
SubtargetsController::$webroot = "/nysgrc/"
SubtargetsController::$action = "index"
SubtargetsController::$params = array
SubtargetsController::$data = NULL
SubtargetsController::$paginate = array
SubtargetsController::$viewPath = "subtargets"
SubtargetsController::$layoutPath = NULL
SubtargetsController::$viewVars = array
SubtargetsController::$modelNames = array
SubtargetsController::$base = "/nysgrc"
SubtargetsController::$layout = "default"
SubtargetsController::$autoRender = false
SubtargetsController::$autoLayout = true
SubtargetsController::$Component = Component object
SubtargetsController::$view = "View"
SubtargetsController::$ext = ".ctp"
SubtargetsController::$output = NULL
SubtargetsController::$plugin = NULL
SubtargetsController::$cacheAction = false
SubtargetsController::$persistModel = false
SubtargetsController::$passedArgs = array
SubtargetsController::$scaffold = false
SubtargetsController::$methods = array
SubtargetsController::$modelClass = "Subtarget"
SubtargetsController::$modelKey = "subtarget"
SubtargetsController::$validationErrors = NULL
SubtargetsController::$__httpCodes = NULL
SubtargetsController::$Auth = AuthComponent object
SubtargetsController::$RequestHandler = RequestHandlerComponent object
SubtargetsController::$Session = SessionComponent object
SubtargetsController::$Toolbox = ToolboxComponent object
SubtargetsController::$DataPipeline = DataPipelineComponent object
SubtargetsController::$Subtarget = Subtarget object
SubtargetsController::$SubtargetAssignment = SubtargetAssignment object
SubtargetsController::$Lab = Lab object
SubtargetsController::$User = User object
)
$loadHelpers = true
$cached = false
$paginator = PaginatorHelper
PaginatorHelper::$helpers = array
PaginatorHelper::$__defaultModel = "Subtarget"
PaginatorHelper::$_ajaxHelperClass = "Js"
PaginatorHelper::$options = array
PaginatorHelper::$base = "/nysgrc"
PaginatorHelper::$webroot = "/nysgrc/"
PaginatorHelper::$theme = NULL
PaginatorHelper::$here = "/nysgrc/subtargets/index/015890"
PaginatorHelper::$params = array
PaginatorHelper::$action = "index"
PaginatorHelper::$plugin = NULL
PaginatorHelper::$data = NULL
PaginatorHelper::$namedArgs = NULL
PaginatorHelper::$argSeparator = NULL
PaginatorHelper::$validationErrors = NULL
PaginatorHelper::$tags = array
PaginatorHelper::$__tainted = NULL
PaginatorHelper::$__cleaned = NULL
PaginatorHelper::$Html = HtmlHelper object
PaginatorHelper::$Js = JsHelper object
$date = DateHelper
DateHelper::$helpers = NULL
DateHelper::$base = "/nysgrc"
DateHelper::$webroot = "/nysgrc/"
DateHelper::$theme = NULL
DateHelper::$here = "/nysgrc/subtargets/index/015890"
DateHelper::$params = array
DateHelper::$action = "index"
DateHelper::$plugin = NULL
DateHelper::$data = NULL
DateHelper::$namedArgs = NULL
DateHelper::$argSeparator = NULL
DateHelper::$validationErrors = NULL
DateHelper::$tags = array
DateHelper::$__tainted = NULL
DateHelper::$__cleaned = NULL
$jqueryEngine = JqueryEngineHelper
JqueryEngineHelper::$_optionMap = array
JqueryEngineHelper::$_callbackArguments = array
JqueryEngineHelper::$jQueryObject = "$"
JqueryEngineHelper::$useNative = true
JqueryEngineHelper::$selection = NULL
JqueryEngineHelper::$bufferedMethods = array
JqueryEngineHelper::$helpers = NULL
JqueryEngineHelper::$base = "/nysgrc"
JqueryEngineHelper::$webroot = "/nysgrc/"
JqueryEngineHelper::$theme = NULL
JqueryEngineHelper::$here = "/nysgrc/subtargets/index/015890"
JqueryEngineHelper::$params = array
JqueryEngineHelper::$action = "index"
JqueryEngineHelper::$plugin = NULL
JqueryEngineHelper::$data = NULL
JqueryEngineHelper::$namedArgs = NULL
JqueryEngineHelper::$argSeparator = NULL
JqueryEngineHelper::$validationErrors = NULL
JqueryEngineHelper::$tags = array
JqueryEngineHelper::$__tainted = NULL
JqueryEngineHelper::$__cleaned = NULL
$js = JsHelper
JsHelper::$bufferScripts = true
JsHelper::$helpers = array
JsHelper::$__jsVars = array
JsHelper::$__bufferedScripts = array
JsHelper::$__engineName = "JqueryEngine"
JsHelper::$setVariable = "app"
JsHelper::$base = "/nysgrc"
JsHelper::$webroot = "/nysgrc/"
JsHelper::$theme = NULL
JsHelper::$here = "/nysgrc/subtargets/index/015890"
JsHelper::$params = array
JsHelper::$action = "index"
JsHelper::$plugin = NULL
JsHelper::$data = NULL
JsHelper::$namedArgs = NULL
JsHelper::$argSeparator = NULL
JsHelper::$validationErrors = NULL
JsHelper::$tags = array
JsHelper::$__tainted = NULL
JsHelper::$__cleaned = NULL
JsHelper::$Html = HtmlHelper object
JsHelper::$Form = FormHelper object
JsHelper::$JqueryEngine = JqueryEngineHelper object
$form = FormHelper
FormHelper::$helpers = array
FormHelper::$fieldset = array
FormHelper::$__options = array
FormHelper::$fields = array
FormHelper::$requestType = NULL
FormHelper::$defaultModel = NULL
FormHelper::$_inputDefaults = array
FormHelper::$_lastAction = ""
FormHelper::$base = "/nysgrc"
FormHelper::$webroot = "/nysgrc/"
FormHelper::$theme = NULL
FormHelper::$here = "/nysgrc/subtargets/index/015890"
FormHelper::$params = array
FormHelper::$action = "index"
FormHelper::$plugin = NULL
FormHelper::$data = NULL
FormHelper::$namedArgs = NULL
FormHelper::$argSeparator = NULL
FormHelper::$validationErrors = NULL
FormHelper::$tags = array
FormHelper::$__tainted = NULL
FormHelper::$__cleaned = NULL
FormHelper::$Html = HtmlHelper object
$javascript = JavascriptHelper
JavascriptHelper::$useNative = true
JavascriptHelper::$enabled = true
JavascriptHelper::$safe = false
JavascriptHelper::$tags = array
JavascriptHelper::$_blockOptions = array
JavascriptHelper::$_cachedEvents = array
JavascriptHelper::$_cacheEvents = false
JavascriptHelper::$_cacheToFile = false
JavascriptHelper::$_cacheAll = false
JavascriptHelper::$_rules = array
JavascriptHelper::$__scriptBuffer = NULL
JavascriptHelper::$helpers = NULL
JavascriptHelper::$base = "/nysgrc"
JavascriptHelper::$webroot = "/nysgrc/"
JavascriptHelper::$theme = NULL
JavascriptHelper::$here = "/nysgrc/subtargets/index/015890"
JavascriptHelper::$params = array
JavascriptHelper::$action = "index"
JavascriptHelper::$plugin = NULL
JavascriptHelper::$data = NULL
JavascriptHelper::$namedArgs = NULL
JavascriptHelper::$argSeparator = NULL
JavascriptHelper::$validationErrors = NULL
JavascriptHelper::$__tainted = NULL
JavascriptHelper::$__cleaned = NULL
$ajax = AjaxHelper
AjaxHelper::$helpers = array
AjaxHelper::$Html = HtmlHelper object
AjaxHelper::$Javascript = JavascriptHelper object
AjaxHelper::$callbacks = array
AjaxHelper::$ajaxOptions = array
AjaxHelper::$dragOptions = array
AjaxHelper::$dropOptions = array
AjaxHelper::$sortOptions = array
AjaxHelper::$sliderOptions = array
AjaxHelper::$editorOptions = array
AjaxHelper::$autoCompleteOptions = array
AjaxHelper::$__ajaxBuffer = array
AjaxHelper::$base = "/nysgrc"
AjaxHelper::$webroot = "/nysgrc/"
AjaxHelper::$theme = NULL
AjaxHelper::$here = "/nysgrc/subtargets/index/015890"
AjaxHelper::$params = array
AjaxHelper::$action = "index"
AjaxHelper::$plugin = NULL
AjaxHelper::$data = NULL
AjaxHelper::$namedArgs = NULL
AjaxHelper::$argSeparator = NULL
AjaxHelper::$validationErrors = NULL
AjaxHelper::$tags = array
AjaxHelper::$__tainted = NULL
AjaxHelper::$__cleaned = NULL
AjaxHelper::$Form = FormHelper object
$session = SessionHelper
SessionHelper::$helpers = array
SessionHelper::$__active = true
SessionHelper::$valid = false
SessionHelper::$error = false
SessionHelper::$_userAgent = "5a088fb542c1b540ccb30719553be0ff"
SessionHelper::$path = "/"
SessionHelper::$lastError = NULL
SessionHelper::$security = "medium"
SessionHelper::$time = 1660446099
SessionHelper::$sessionTime = 1660458099
SessionHelper::$cookieLifeTime = false
SessionHelper::$watchKeys = array
SessionHelper::$id = NULL
SessionHelper::$host = NULL
SessionHelper::$timeout = NULL
SessionHelper::$base = "/nysgrc"
SessionHelper::$webroot = "/nysgrc/"
SessionHelper::$here = "/nysgrc/subtargets/index/015890"
SessionHelper::$params = array
SessionHelper::$action = "index"
SessionHelper::$data = NULL
SessionHelper::$theme = NULL
SessionHelper::$plugin = NULL
$html = HtmlHelper
HtmlHelper::$tags = array
HtmlHelper::$_crumbs = array
HtmlHelper::$__includedScripts = array
HtmlHelper::$_scriptBlockOptions = array
HtmlHelper::$__docTypes = array
HtmlHelper::$helpers = NULL
HtmlHelper::$base = "/nysgrc"
HtmlHelper::$webroot = "/nysgrc/"
HtmlHelper::$theme = NULL
HtmlHelper::$here = "/nysgrc/subtargets/index/015890"
HtmlHelper::$params = array
HtmlHelper::$action = "index"
HtmlHelper::$plugin = NULL
HtmlHelper::$data = NULL
HtmlHelper::$namedArgs = NULL
HtmlHelper::$argSeparator = NULL
HtmlHelper::$validationErrors = NULL
HtmlHelper::$__tainted = NULL
HtmlHelper::$__cleaned = NULL
$actions = ActionsHelper
ActionsHelper::$helpers = array
ActionsHelper::$addIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_01.png"
ActionsHelper::$listIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_61.png"
ActionsHelper::$deleteIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_02.png"
ActionsHelper::$editIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_45.png"
ActionsHelper::$loginIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_59.png"
ActionsHelper::$logoutIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_51.png"
ActionsHelper::$cancelIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_05.png"
ActionsHelper::$okIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_06.png"
ActionsHelper::$settingsIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_41.png"
ActionsHelper::$bugIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_50.png"
ActionsHelper::$menuIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_20.png"
ActionsHelper::$lockIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_42.png"
ActionsHelper::$warningIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_11.png"
ActionsHelper::$internalIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_37.png"
ActionsHelper::$base = "/nysgrc"
ActionsHelper::$webroot = "/nysgrc/"
ActionsHelper::$theme = NULL
ActionsHelper::$here = "/nysgrc/subtargets/index/015890"
ActionsHelper::$params = array
ActionsHelper::$action = "index"
ActionsHelper::$plugin = NULL
ActionsHelper::$data = NULL
ActionsHelper::$namedArgs = NULL
ActionsHelper::$argSeparator = NULL
ActionsHelper::$validationErrors = NULL
ActionsHelper::$tags = array
ActionsHelper::$__tainted = NULL
ActionsHelper::$__cleaned = NULL
ActionsHelper::$Html = HtmlHelper object
ActionsHelper::$Session = SessionHelper object
ActionsHelper::$Ajax = AjaxHelper object
$colors = array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"in_pdb" => "#FFC0C0"
)
$subtargets = array(
array(
"Subtarget" => array(),
"Target" => array(),
"Assignment" => array()
)
)
$view_own = true
$view_others = true
$edit_admin = false
$edit_other_profile = false
$edit_group_profile = false
$edit_own_profile = false
$edit_others = false
$edit_group = false
$edit_own = false
$view_request = false
$view_group = true
$view_contact_only = false
$view_pi_only = false
$view_vip_only = false
$controller = SubtargetsController
SubtargetsController::$name = "Subtargets"
SubtargetsController::$helpers = array
SubtargetsController::$restrict = array
SubtargetsController::$uses = array
SubtargetsController::$components = array
SubtargetsController::$publicControllers = array
SubtargetsController::$here = "/nysgrc/subtargets/index/015890"
SubtargetsController::$webroot = "/nysgrc/"
SubtargetsController::$action = "index"
SubtargetsController::$params = array
SubtargetsController::$data = NULL
SubtargetsController::$paginate = array
SubtargetsController::$viewPath = "subtargets"
SubtargetsController::$layoutPath = NULL
SubtargetsController::$viewVars = array
SubtargetsController::$modelNames = array
SubtargetsController::$base = "/nysgrc"
SubtargetsController::$layout = "default"
SubtargetsController::$autoRender = false
SubtargetsController::$autoLayout = true
SubtargetsController::$Component = Component object
SubtargetsController::$view = "View"
SubtargetsController::$ext = ".ctp"
SubtargetsController::$output = NULL
SubtargetsController::$plugin = NULL
SubtargetsController::$cacheAction = false
SubtargetsController::$persistModel = false
SubtargetsController::$passedArgs = array
SubtargetsController::$scaffold = false
SubtargetsController::$methods = array
SubtargetsController::$modelClass = "Subtarget"
SubtargetsController::$modelKey = "subtarget"
SubtargetsController::$validationErrors = NULL
SubtargetsController::$__httpCodes = NULL
SubtargetsController::$Auth = AuthComponent object
SubtargetsController::$RequestHandler = RequestHandlerComponent object
SubtargetsController::$Session = SessionComponent object
SubtargetsController::$Toolbox = ToolboxComponent object
SubtargetsController::$DataPipeline = DataPipelineComponent object
SubtargetsController::$Subtarget = Subtarget object
SubtargetsController::$SubtargetAssignment = SubtargetAssignment object
SubtargetsController::$Lab = Lab object
SubtargetsController::$User = User object
$center_id = "NYSGRC"
$i = 1
$subtarget = array(
"Subtarget" => array(
"id" => "7056",
"target_id" => "015890",
"sequence_start" => "0",
"sequence_end" => "0",
"mutation" => "",
"sequence" => "",
"dna_sequence" => null,
"sequence_comments" => null,
"date_selected" => null,
"priority" => null,
"inserted" => "2012-05-14 21:23:49.946858+00",
"updated" => "2012-05-14 21:23:49.946858+00",
"lab_assigned" => "AECOM",
"date_assigned" => null
),
"Target" => array(
"id" => "16273",
"target_id" => "015890",
"local_target_id" => "015890",
"locus_tag" => "P9215_18071",
"ncbi_gi" => "157414140",
"ncbi_accession" => "YP_001485006.1",
"ncbi_geneid" => "5614696",
"ncbi_taxon_id" => "93060",
"gene_name" => "rpoA",
"common_name" => "DNA-directed RNA polymerase subunit alpha [Prochlorococcus marinus str. MIT 9215]",
"ncbi_coded_by_region" => "complement(NC_009840.1:1556474..1557412)",
"ncbi_note" => "catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme",
"tigr_main_role_id" => null,
"tigr_sub_role_id" => null,
"comment" => null,
"justification" => null,
"sequence" => "MLQYQIDRIDHQIADDRSQTGTFLIGPLERGQATTLGNSLRRVLMGGLEGSAVTAVRIAGINHEYATIPGVREDVLDILLNCKQLSINSSSPDLEIGRLVASGPMDVKANDIQFSSQVEIVDGEKPIATIQEGHNLELEIHVERGVGYRPVDRKSEETTAIDLLQIDAVFMPVKRVNFTIDETAVAEGGTGRERLKMEVVTDGSTSPDDAIAEAANQLIELFQPLATVTMVEEIPEEPEPSPEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIDALERIGISIPQSRTSV",
"sequence_length" => "312",
"dna_sequence" => "GTGTTGCAATACCAGATTGACAGAATCGACCATCAAATAGCAGATGATCGCTCCCAAACAGGAACTTTTTTAATTGGCCCTCTAGAAAGGGGACAAGCTACAACTTTGGGTAATTCTCTCAGAAGAGTCCTTATGGGAGGACTTGAAGGGAGTGCAGTTACTGCAGTAAGAATAGCAGGAATTAATCATGAATATGCCACTATTCCTGGAGTTAGAGAGGACGTTTTGGATATTCTTCTCAATTGCAAGCAACTTTCTATAAATAGTTCTAGCCCAGACCTCGAAATTGGGAGGTTAGTAGCGAGTGGACCAATGGATGTGAAGGCGAATGACATACAATTTTCCTCTCAAGTTGAAATTGTTGATGGCGAAAAACCCATCGCAACTATTCAGGAGGGTCATAACTTAGAGTTAGAAATTCATGTTGAAAGAGGTGTTGGATATAGACCTGTTGATCGTAAGAGTGAAGAGACAACTGCTATTGATTTACTTCAAATAGATGCTGTATTTATGCCAGTAAAGAGGGTAAATTTTACGATTGATGAAACTGCTGTAGCAGAAGGAGGAACAGGAAGAGAAAGATTAAAAATGGAAGTTGTAACAGATGGATCAACAAGTCCTGATGATGCTATTGCTGAAGCTGCAAATCAGTTAATAGAACTCTTTCAACCTCTTGCTACCGTTACAATGGTTGAGGAAATTCCTGAAGAACCTGAACCATCTCCTGAAGCTCAAATTCCTCTTGAGGAACTAAATTTGTCCGTTAGAGCATATAATTGTTTGAAAAGGGCTCAAGTTAACTCAGTTTCGGATTTAATGGGCTTCAGCTATGAAGATCTTCTTGAAATTAAGAACTTTGGTTCTAAATCTGCAGATGAGGTTATTGACGCTCTTGAGCGCATTGGCATTTCTATTCCACAAAGCAGAACATCTGTTTAA",
"dna_sequence_ncbi" => null,
"priority" => "1",
"project" => "BIO:PRO",
"selection_phase" => null,
"date_selected" => "2011-12-13",
"date_approved" => null,
"completion_code" => null,
"pi" => null,
"tms" => null,
"sp" => null,
"core_genome" => null,
"gram_minus_gene_homolog" => null,
"gram_plus_gene_homolog" => null,
"protease_motifs" => null,
"glycosyl_group_metabolism" => null,
"study_id" => null,
"drug_target_homologs" => null,
"virulence_genes" => null,
"essential_genes_homologs" => null,
"dna_binding_motifs" => null,
"inserted" => "2011-12-13 20:50:22.917551+00",
"updated" => "2011-12-13 20:50:22.917551+00",
"species_taxon_id" => "1219",
"ins_user_id" => "2",
"upd_user_id" => null,
"stage" => "cloned",
"hidden" => false,
"submitter_id" => "212",
"selection_db_id" => null,
"dna_source_taxon_id" => null,
"batch" => "prochlorococcus batch 1",
"genus_taxon_id" => "1218",
"seguid" => null,
"uniprot_id" => null,
"ec" => null,
"target_family" => null,
"tar_designpool_id" => null,
"community_nominated" => false,
"partnership_nominated" => null,
"biomedical" => true,
"metagenomic" => false,
"structural_coverage" => false,
"psi2" => false,
"legacy" => false,
"complex_with_biological_partner" => false,
"functional_mutant" => false,
"conformational_state" => false,
"disease" => false,
"individual_organism" => false,
"protein_family_of_high_biological_importance" => false,
"general_domain_family" => false,
"eukaryotic_domain_family" => false,
"first_structure_of_class" => false,
"functional_follow_up" => false,
"technology_development" => false,
"membrane_protein" => false,
"translated_dna_sequence" => null,
"family_coverage" => null,
"family_coverage_date" => null,
"distribution_lab" => null,
"uniprot_accession" => null,
"protocol_id" => "Target_selection",
"ensembl_protein_id" => null,
"ensembl_gene_id" => null,
"type" => "single protein",
"ligand_studies" => false,
"protein_production_for_partnerships" => false,
"single_domain_protein" => false,
"multidomain_protein" => false,
"oligomeric_protein" => false,
"eukaryotic_protein" => false,
"protein_protein_complex" => false,
"protein_nucleic_acid_complex" => false,
"protein_ligand_complex" => false,
"de_novo_designed_protein" => false,
"post_translational_modification" => false
),
"Assignment" => array(
array()
)
)
$lclass = " class="link altrow""
$class = " class="altrow""
$rand = 776198494 include - /var/www/unitrack/views/subtargets/unitrack_index.ctp, line 55
include - APP/views/subtargets/index.ctp, line 1
View::_render() - CORE/cake/libs/view/view.php, line 736
View::render() - CORE/cake/libs/view/view.php, line 431
Controller::render() - CORE/cake/libs/controller/controller.php, line 909
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 207
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83 |
AECOM |
|