Warning (2): pg_query() [function.pg-query]: Query failed: ERROR:  missing FROM-clause entry for table "Stage"
LINE 1: ..." = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."s...
                                                             ^ [CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 169]
Code | Context
 */
    function _execute($sql) {
        return pg_query($this->connection, $sql);
$sql	=	"SELECT "Target"."target_id" AS "Target__target_id", "Target"."priority" AS "Target__priority", "Target"."stage" AS "Target__stage", "Target"."locus_tag" AS "Target__locus_tag", "Target"."ncbi_gi" AS "Target__ncbi_gi", "Target"."common_name" AS "Target__common_name", "Target"."sequence_length" AS "Target__sequence_length", "Target"."project" AS "Target__project", "ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id", "ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity", "Organism"."name_text" AS "Organism__name_text", "Organism"."tax_id" AS "Organism__tax_id" FROM "protein_target" AS "Target" LEFT JOIN "names" AS "Organism" ON ("Target"."ncbi_taxon_id" = "Organism"."tax_id" AND "Organism"."name_class" = 'scientific name') LEFT JOIN "protein_pdb_homolog_table" AS "ProteinPdbHomolog" ON ("ProteinPdbHomolog"."protein_target_id" = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."sequence" asc "
pg_query - [internal], line ??
DboPostgres::_execute() - CORE/cake/libs/model/datasources/dbo/dbo_postgres.php, line 169
DboSource::execute() - CORE/cake/libs/model/datasources/dbo_source.php, line 254
DboSource::fetchAll() - CORE/cake/libs/model/datasources/dbo_source.php, line 411
DboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 822
Model::find() - CORE/cake/libs/model/model.php, line 2153
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1527
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Warning (512): SQL Error: ERROR:  missing FROM-clause entry for table "Stage"
LINE 1: ..." = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."s...
                                                             ^ [CORE/cake/libs/model/datasources/dbo_source.php, line 685]
Code | Context

        if ($this->error) {
            $this->showQuery($sql);
$sql	=	"SELECT "Target"."target_id" AS "Target__target_id", "Target"."priority" AS "Target__priority", "Target"."stage" AS "Target__stage", "Target"."locus_tag" AS "Target__locus_tag", "Target"."ncbi_gi" AS "Target__ncbi_gi", "Target"."common_name" AS "Target__common_name", "Target"."sequence_length" AS "Target__sequence_length", "Target"."project" AS "Target__project", "ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id", "ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity", "Organism"."name_text" AS "Organism__name_text", "Organism"."tax_id" AS "Organism__tax_id" FROM "protein_target" AS "Target" LEFT JOIN "names" AS "Organism" ON ("Target"."ncbi_taxon_id" = "Organism"."tax_id" AND "Organism"."name_class" = 'scientific name') LEFT JOIN "protein_pdb_homolog_table" AS "ProteinPdbHomolog" ON ("ProteinPdbHomolog"."protein_target_id" = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."sequence" asc "
$error	=	"ERROR:  missing FROM-clause entry for table "Stage"
LINE 1: ..." = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."s...
                                                             ^"
$out	=	null
DboSource::showQuery() - CORE/cake/libs/model/datasources/dbo_source.php, line 685
DboSource::execute() - CORE/cake/libs/model/datasources/dbo_source.php, line 267
DboSource::fetchAll() - CORE/cake/libs/model/datasources/dbo_source.php, line 411
DboSource::read() - CORE/cake/libs/model/datasources/dbo_source.php, line 822
Model::find() - CORE/cake/libs/model/model.php, line 2153
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1527
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Query: SELECT "Target"."target_id" AS "Target__target_id", "Target"."priority" AS "Target__priority", "Target"."stage" AS "Target__stage", "Target"."locus_tag" AS "Target__locus_tag", "Target"."ncbi_gi" AS "Target__ncbi_gi", "Target"."common_name" AS "Target__common_name", "Target"."sequence_length" AS "Target__sequence_length", "Target"."project" AS "Target__project", "ProteinPdbHomolog"."pdb_id" AS "ProteinPdbHomolog__pdb_id", "ProteinPdbHomolog"."sequence_identity" AS "ProteinPdbHomolog__sequence_identity", "Organism"."name_text" AS "Organism__name_text", "Organism"."tax_id" AS "Organism__tax_id" FROM "protein_target" AS "Target" LEFT JOIN "names" AS "Organism" ON ("Target"."ncbi_taxon_id" = "Organism"."tax_id" AND "Organism"."name_class" = 'scientific name') LEFT JOIN "protein_pdb_homolog_table" AS "ProteinPdbHomolog" ON ("ProteinPdbHomolog"."protein_target_id" = "Target"."target_id")  WHERE 1 = 1   ORDER BY "Stage"."sequence" asc  

Notice (8): Undefined offset: 0 [APP/models/target.php, line 37]
Code | Context
        if (($center_id == 'CSGID') || ($center_id == 'NYSGRC')) {
            for($i=0;$i<sizeof($targets);$i++){
                $targets[$i]['Target']['stage'] = $targets[$i]['Target']['stage'].": ".$this->Target->get_deposits($targets[$i]['Target']['target_id']);
$target_id	=	null
$deposits	=	array()
Target::get_deposits() - APP/models/target.php, line 37
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1533
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: target_id [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"target_id"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"target_id_check",
	"NYSGRC ID"
)
$key	=	"Target.target_id"
$header	=	"NYSGRC ID"
$check	=	"target_id_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: priority [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"priority"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"priority_check",
	"Priority"
)
$key	=	"Target.priority"
$header	=	"Priority"
$check	=	"priority_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: locus_tag [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"locus_tag"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"locus_tag_check",
	"Locus Tag"
)
$key	=	"Target.locus_tag"
$header	=	"Locus Tag"
$check	=	"locus_tag_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: ncbi_gi [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"ncbi_gi"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"ncbi_gi_check",
	"NCBI GI"
)
$key	=	"Target.ncbi_gi"
$header	=	"NCBI GI"
$check	=	"ncbi_gi_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: common_name [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"common_name"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"common_name_check",
	"Common Name"
)
$key	=	"Target.common_name"
$header	=	"Common Name"
$check	=	"common_name_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: sequence_length [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"sequence_length"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"length_check",
	"Sequence Length"
)
$key	=	"Target.sequence_length"
$header	=	"Sequence Length"
$check	=	"length_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: project [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"project"
$name	=	"Target"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"project_check",
	"Project"
)
$key	=	"Target.project"
$header	=	"Project"
$check	=	"project_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: ProteinPdbHomolog [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"pdb_id"
$name	=	"ProteinPdbHomolog"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
)
$key	=	"ProteinPdbHomolog.pdb_id"
$header	=	"Homolog PDB ID"
$check	=	"homolog_pdb_id_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Notice (8): Undefined index: Organism [/var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587]
Code | Context
        if (isset($this->params['named']['report'])
            && $this->params['named']['report']==true) {
            $this->create_report();
$center_id	=	"NYSGRC"
$columns	=	array(
	"Target.target_id" => array(
	"target_id_check",
	"NYSGRC ID"
),
	"Target.priority" => array(
	"priority_check",
	"Priority"
),
	"Target.stage" => array(
	"stage_check",
	"Stage"
),
	"Target.locus_tag" => array(
	"locus_tag_check",
	"Locus Tag"
),
	"Target.ncbi_gi" => array(
	"ncbi_gi_check",
	"NCBI GI"
),
	"Target.common_name" => array(
	"common_name_check",
	"Common Name"
),
	"Target.sequence_length" => array(
	"length_check",
	"Sequence Length"
),
	"Target.project" => array(
	"project_check",
	"Project"
),
	"ProteinPdbHomolog.pdb_id" => array(
	"homolog_pdb_id_check",
	"Homolog PDB ID"
),
	"ProteinPdbHomolog.sequence_identity" => array(
	"homolog_sequence_identity_check",
	"Homolog Sequence Identity"
),
	"Organism.name_text" => array(
	"organism_check",
	"Target Organism"
)
)
$order	=	"Stage.sequence asc"
$fields	=	array(
	"target_id",
	"priority",
	"stage",
	"locus_tag",
	"ncbi_gi",
	"common_name",
	"sequence_length",
	"project"
)
$contain	=	array(
	"ProteinPdbHomolog.pdb_id",
	"ProteinPdbHomolog.sequence_identity",
	"Organism.name_text"
)
$v	=	array(
	"organism_check",
	"Target Organism"
)
$k	=	"Organism.name_text"
$field	=	"name_text"
$name	=	"Organism"
$targets	=	array(
	array(
	"Target" => array()
)
)
$i	=	1
$params	=	array(
	"target_id_check" => "1",
	"locus_tag_check" => "1",
	"ncbi_gi_check" => "1",
	"common_name_check" => "1",
	"length_check" => "1",
	"project_check" => "1",
	"homolog_pdb_id_check" => "1",
	"homolog_sequence_identity_check" => "1",
	"organism_check" => "1",
	"priority_check" => "1",
	"stage_check" => "1",
	"request_person_check" => "1",
	"page" => "135",
	"limit" => "200",
	"sort" => "Stage.sequence",
	"direction" => "asc",
	"report" => "1"
)
$center	=	"NYSGRC"
$fileName	=	"reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
$fileHandle	=	resource
$val	=	array(
	"organism_check",
	"Target Organism"
)
$key	=	"Organism.name_text"
$header	=	"Target Organism"
$check	=	"organism_check"
$target	=	array(
	"Target" => array(
	"stage" => ": "
)
)
$is_multi	=	""
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1587
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83

Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/cakephp-1.3-git/cake/libs/debugger.php:686) [CORE/cake/libs/controller/controller.php, line 742]
Code | Context
 */
    function header($status) {
        header($status);
$status	=	"Location: https://kiemlicz.med.virginia.edu/nysgrc/targets/../reports/nysgrc_targets_2023-06-09T10:53:47-04:00.tsv"
header - [internal], line ??
Controller::header() - CORE/cake/libs/controller/controller.php, line 742
Controller::redirect() - CORE/cake/libs/controller/controller.php, line 721
Unitrack_TargetsController::create_report() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 1598
Unitrack_TargetsController::index() - /var/www/unitrack/controllers/unitrack_targets_controller.php, line 733
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 204
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 83